Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2307 ATGGAAATGAGAGGGCAAGATAAGGAAATAGAGATACCAACCACTATAGGTTACAACCTTCCCAACCGAGATtctccctcttcttcttccaagCTCTCTTCTCCAACTGTTGGTGAAAGAAGTAGTGATGATCAACAACATCAACCACCTCATCAAATTCACACGTCAATCTTCAACGAACCACCTCACCATAATCTCTATCCACCACCCCGTCAACCTCATCATAGACCCACATCAGATCCAGATCTAAGCACCCCAATTGCTCCCACATCGAACCCCCCAAGAACAGCACCGcctcaaacaacaacaacaacaacaacctcgACCCCATCAATCAGGTACCGAGAATGTCTGAGGAACCACGCGGCAAGCATGGGGAGCCACGTGGTGGATGGCTGTGGAGAGTTCATGGCAAGTGGAGAAGAAGGCACCCCGGAATCGCTAAGATGCGCCGCGTGTGAGTGCCACCGCAACTTCCACAGAAAAGAGGTTGAAGGAGAacaaccacaaccaccgccGCTGCCGCCACAACCCCAACATGTTCCCAATTATCACAGCTACTACCCCAACAAGCACAACGGTCACCTTCACTTCCCTCCACCCTCTTCTTCCCTCCATCATCATAGATTGGTTGCCACTACTGCTACACCAAGTTTGGTGCCCCCAGTGATGATGGCCTTTGGAGGCCCCGCTGAGTCCTCAAGTGAAGATCTCAACATGTTTCAGTCCAACACCGGAGCACAGTTGTCAGTGCAGGCACCGCTTTCTTCCAAGAAGAGGTTCAGGACTAAGTTCTCTCAGCACCAGAAGGATAGGATGATGGAGTTTGCTGACAACATTGGTTGGAAGATCCAGAAACATAATGAGCAGGAGGTACAGAACTTCTGTTCTCAAGTGGGTGTCAAGAGACAGGTTTTCAAGGTTTGGATGCACAATAACAAGCAAACAAGTAAGAAGCAGCAAATCCATTTTCACCCTGGGGCAAGAAACTAG 993 0.4602 MEMRGQDKEIEIPTTIGYNLPNRDSPSSSSKLSSPTVGERSSDDQQHQPPHQIHTSIFNEPPHHNLYPPPRQPHHRPTSDPDLSTPIAPTSNPPRTAPPQTTTTTTTSTPSIRYRECLRNHAASMGSHVVDGCGEFMASGEEGTPESLRCAACECHRNFHRKEVEGEQPQPPPLPPQPQHVPNYHSYYPNKHNGHLHFPPPSSSLHHHRLVATTATPSLVPPVMMAFGGPAESSSEDLNMFQSNTGAQLSVQAPLSSKKRFRTKFSQHQKDRMMEFADNIGWKIQKHNEQEVQNFCSQVGVKRQVFKVWMHNNKQTSKKQQIHFHPGARN 330
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2307 330 Gene3D - 244 319 - -
Ssu2g2307 330 TIGRFAM homeo_ZF_HD: homeobox domain, ZF-HD class 258 315 IPR006455 -
Ssu2g2307 330 Pfam ZF-HD protein dimerisation region 112 164 IPR006456 -
Ssu2g2307 330 SUPERFAMILY Homeodomain-like 250 319 IPR009057 -
Ssu2g2307 330 TIGRFAM ZF_HD_prot_N: ZF-HD homeobox protein Cys/His-rich dimerization domain 113 164 IPR006456 -
Ssu2g2307 330 MobiDBLite consensus disorder prediction 1 113 - -
Ssu2g2307 330 ProSiteProfiles Zinc-finger ZF-HD dimerization-type profile. 114 163 IPR006456 -
Ssu2g2307 330 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 7 45 320 - -
Ssu2g2307 330 MobiDBLite consensus disorder prediction 18 59 - -
Ssu2g2307 330 MobiDBLite consensus disorder prediction 97 113 - -
Ssu2g2307 330 PANTHER ZINC-FINGER HOMEODOMAIN PROTEIN 2 45 320 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2307 Ssu-Chr2 80159328 80160687 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2307 84 322 ZF-HD Transcription Factor Family AT2G18350 48.361 2.21e-68 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF zf-HD Ssu2g2307 ZF-HD_dimer 1.7e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2307 - - vra:106776405 478.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2307 2 80159328 80160687 Ssu6g1997 6 36597750 36598733 PCT