Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2305 ATGCATCGTGGTTGCAGTGGCTCCCAGGGGCACGTGATGGGACCCTGCACATGTGGTGTGTTTCACAGCCAAACCAGTTCCTTCTCGATGCTCTTCTCCATGCCCAACCACAAACCACCCTACGACGAATCCGACATGTATGACTATTCCTTCACTCCCTCTTCCTCTTCCGTTGACTGCACTCTCTCCCTCGGAACCCCATCCACCCGCTTCACTGAAGACGAAGAAAAACGAAGCCGCCACCAACGTCGCTCCGTCTCTAACTTCTGCTGGGATTTACTACAATCCAATCACAACCCCCAATCCCAAACCAAGTCCACACGTGCCACCAATACCACCGACCCTCTCCTCGCTCGTCGCTGCGCCAATTGTGACACCACTTCAACTCCCCTCTGGAGAAATGGCCCCCGAGGCCCCAAGTCACTGTGCAATGCGTGTGGGATTAGATTCAAGAAGGAAGAGAGAAGAGCGAGCGCTGCCGCCACCACGCCGGCGGCGGCTTCTGGCGGCGTAATGGAATCGGCGCAGGTGTACAATAACTCGTGGTACGCACACCAGCAGAGTCAGAAGATGCAGTGTTTCTCGCCGGGGATGGGGAACGAGTTCCGTTTCGTGGATGACGCCGACCGAGACGCCGATAACGGCATTCCGTTTCTCCCTTGGAGACTCAACGTTACGGACAGAACGAGCCTCGTTCACGACTTCACGAGATGA 714 0.5616 MHRGCSGSQGHVMGPCTCGVFHSQTSSFSMLFSMPNHKPPYDESDMYDYSFTPSSSSVDCTLSLGTPSTRFTEDEEKRSRHQRRSVSNFCWDLLQSNHNPQSQTKSTRATNTTDPLLARRCANCDTTSTPLWRNGPRGPKSLCNACGIRFKKEERRASAAATTPAAASGGVMESAQVYNNSWYAHQQSQKMQCFSPGMGNEFRFVDDADRDADNGIPFLPWRLNVTDRTSLVHDFTR 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2305 237 Pfam GATA zinc finger 121 155 IPR000679 GO:0006355|GO:0043565
Ssu2g2305 237 ProSitePatterns GATA-type zinc finger domain. 121 146 IPR000679 GO:0006355|GO:0043565
Ssu2g2305 237 Gene3D - 117 191 IPR013088 GO:0006355|GO:0008270
Ssu2g2305 237 CDD ZnF_GATA 120 152 IPR000679 GO:0006355|GO:0043565
Ssu2g2305 237 SMART GATA_3 115 169 IPR000679 GO:0006355|GO:0043565
Ssu2g2305 237 PANTHER GATA TRANSCRIPTION FACTOR 18 1 236 IPR044272 GO:0003700|GO:0009908
Ssu2g2305 237 ProSiteProfiles GATA-type zinc finger domain profile. 115 151 IPR000679 GO:0006355|GO:0043565
Ssu2g2305 237 PANTHER GATA TRANSCRIPTION FACTOR 18 1 236 - -
Ssu2g2305 237 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 118 158 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2305 Ssu-Chr2 80088665 80089679 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2305 17 237 C2C2-Gata Transcription Factor Family AT3G50870 42.308 3.96e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Ssu2g2305 GATA 5.6e-18 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2305 - - gmx:100790571 413.69
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2305 2 80088665 80089679 Ssu6g1993 6 36399157 36400682 PCT