Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2293 ATGGAGGTGAAGAACAAAGTGAAGAACGAGGATCCTGCAGCGGAGTCTCCAACTTCGGTCCTCGAAGACGAGGATGTCTGTGCCACGAAAGAGGAAGTGAAGTCAGAGGAAGAGGTGATTGCTGATGTTAAAGATGATGGGTCCTCTCTTGTATTGAAAACAATGGCGGACGAGGAAGAGAAGTTACTTGAAGCTAGGATGAAGGAAGAGGAGGTGCAGTGTGAGGGGGCACCTGATCTCAATGACACACAGTTTAACAAATTGGATGAGCTTTTAACTCAAACCAAACTGTACTCTGAGTTTCTTCTGGAGAAAATGGATGACATcacacttGCCACGGGTGAACAAGAGAATGGGGAAGAGCAAGAGAACAATCCTTCTGCAAAGAAGAAGGGCCGGGGATCGAAAAGAAAAGCTGCTTCACAGTACAATACTAGGAAGGCCAAAAGGGCAGTTGCTGCCATGCTAACAAGATCTAAAGAAAGTGAGGGGACTGAAGATATGAACATGACTGAAGAAGAAAGAGTTGAGAAGGAGCAGAAAGAGCTCATGCCTTTACTAACAGGTGGAAAATTGAAGCCTTATCAACTGAAGGGTGTAAAATGGTTAATTTCACTGTGGCAAAATGGGCTGAATGGGATTCTTGCTGATCAAATGGGCCTTGGGAAGACAATCCAAACGATTGGATTTCTCTCACATCTAAAAGGGAAAGGTCTGGATGGGCCATACATGATAATTGCTCCTCTATCTACCCTCTCAAACTGGGTGAATGAGATTTCTAGGTTTGCACCATCACTCCCTGCCATTATCTACCATGGTGACAAGAAACAAAGAGATGAGATCCGAAGGAAACATATGCCTACTAGAACAGTTGGCCCAAAATTCCCCATAGTCATAACTTCTTATGAGGTTGCTTTAAATGatgctaaaaaatatttcagGTCATACAATTGGAAATATCTTGTTGTTGATGAGGGACACAGGCTCAAAAACTCCCAATGCAAATTAGTGAAGgcattgaaatatataaatgtagAAAACAAGCTTCTTCTAACTGGAACTCCTCTTCAGAATAATTTGGCAGAGCTATGGTCTCTGTTGAACTTCATTTTGCCTGATATTTTTGCATCCCTTGAAGAATTTGAGTCATGGTTTAATCTGTCAGGAAAGTGCAATAACGGAGCAACCAAGGAAGAACTGGAAGAGAAACGAAGAGCCCAAGTAGTAGCAAAGCTTCATGCCATTCTTCGACCTTTTCTTCTGCGTAGGATGAAGTCTGATGTTGAGATTATGTTGCCACGGAAAAAGGAGATTATTATCTATGCAAACATGACTGAGCATCAGAAGAATTTGCAGGATCATTTAGTTAATAAGACGTTGGGGAActatttacaagaaaaatcatCATATGGACGTGGTGCACCACGTATGATTCATAATTTGGTTATTCAACTTAGGAAGGTTTGCAACCATCCTGATCTCCTAGAGTCACCCTATGACGGTTCATATTTTTATCCTCCTCTAAATGAGATAGTTGAACAATGTGGAAAATTCAATTTGCTTGATCGATTGCTGCAACGTTTATTTGCCAGGAATCACAAAGTTCTTATCTTCAGTCAGTGGACTAAAGTGTTAGATATAATGGATTATTATTTTAGTGAAAAGGGCTCTGAAGTTTGCAGGATTGATGGTAGTGTGAAACTAGATGAAAGGAAACGACAGATCGAGGAATTCAATGATACAAATAGCAATTGCAGAATCTTCCTTCTTTCTACTCGGGCTGGTGGTTTGGGAATTAACCTCACTGCAGCTGATACTTGCATTCTTTATGACAGTGACTGGAATCCTCAGATGGATTTACAGGCCATGGATAGATGTCATAGAATAGGCCAAACAAAGCCTGTTCATGTTTACAGGCTTTCAACAGCTCAATCTGTAGAGGGTCGCATGTTGAAAAGAGCTTTCAGTAAATTGAAGCTTGAGCATGTAGTGATTGAGAAAGGACAGTTTCATCAAGAACGTGCAAAAACTGTTAGTCTGGATGAAATGGAGGAAGAGGATGTTTTGGCATTGCTTCGAGAAGACGAAACAGCCGAAGATAAAGTGATACAAACAGATATTAGTGATGAAGACCTGGAGAAGCTCTTGGATCGCAGTGATCTTATCGTCAGTAACTCAAACGATGATAACTTAAAAGCTCCAGTCAGTACGTTTCCTCTTAAAGGGCCAGGGTGGGAGGTGGTGATTCCAACTGCTACTGGAGGCATGCTTTCTACTCTTAACAGCTAG 2289 0.4059 MEVKNKVKNEDPAAESPTSVLEDEDVCATKEEVKSEEEVIADVKDDGSSLVLKTMADEEEKLLEARMKEEEVQCEGAPDLNDTQFNKLDELLTQTKLYSEFLLEKMDDITLATGEQENGEEQENNPSAKKKGRGSKRKAASQYNTRKAKRAVAAMLTRSKESEGTEDMNMTEEERVEKEQKELMPLLTGGKLKPYQLKGVKWLISLWQNGLNGILADQMGLGKTIQTIGFLSHLKGKGLDGPYMIIAPLSTLSNWVNEISRFAPSLPAIIYHGDKKQRDEIRRKHMPTRTVGPKFPIVITSYEVALNDAKKYFRSYNWKYLVVDEGHRLKNSQCKLVKALKYINVENKLLLTGTPLQNNLAELWSLLNFILPDIFASLEEFESWFNLSGKCNNGATKEELEEKRRAQVVAKLHAILRPFLLRRMKSDVEIMLPRKKEIIIYANMTEHQKNLQDHLVNKTLGNYLQEKSSYGRGAPRMIHNLVIQLRKVCNHPDLLESPYDGSYFYPPLNEIVEQCGKFNLLDRLLQRLFARNHKVLIFSQWTKVLDIMDYYFSEKGSEVCRIDGSVKLDERKRQIEEFNDTNSNCRIFLLSTRAGGLGINLTAADTCILYDSDWNPQMDLQAMDRCHRIGQTKPVHVYRLSTAQSVEGRMLKRAFSKLKLEHVVIEKGQFHQERAKTVSLDEMEEEDVLALLREDETAEDKVIQTDISDEDLEKLLDRSDLIVSNSNDDNLKAPVSTFPLKGPGWEVVIPTATGGMLSTLNS 762
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2293 762 Pfam Helicase conserved C-terminal domain 518 630 IPR001650 -
Ssu2g2293 762 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 204 373 IPR014001 -
Ssu2g2293 762 PANTHER SNF2/RAD54 HELICASE FAMILY 6 761 - -
Ssu2g2293 762 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 520 676 IPR001650 -
Ssu2g2293 762 CDD DEXHc_HELLS_SMARCA6 189 425 IPR044753 GO:0005524
Ssu2g2293 762 PANTHER BNAC07G16550D PROTEIN 9 761 - -
Ssu2g2293 762 Gene3D - 429 732 IPR027417 -
Ssu2g2293 762 Coils Coil 55 75 - -
Ssu2g2293 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 165 423 IPR027417 -
Ssu2g2293 762 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 425 717 IPR027417 -
Ssu2g2293 762 MobiDBLite consensus disorder prediction 114 147 - -
Ssu2g2293 762 MobiDBLite consensus disorder prediction 1 26 - -
Ssu2g2293 762 PANTHER SNF2/RAD54 HELICASE FAMILY 9 761 - -
Ssu2g2293 762 SMART helicmild6 546 630 IPR001650 -
Ssu2g2293 762 SMART ultradead3 188 384 IPR014001 -
Ssu2g2293 762 CDD SF2_C_SNF 506 640 - -
Ssu2g2293 762 Pfam SNF2-related domain 195 494 IPR000330 GO:0005524|GO:0140658
Ssu2g2293 762 PANTHER ATP-DEPENDENT DNA HELICASE DDM1-LIKE ISOFORM X1 6 761 - -
Ssu2g2293 762 Gene3D - 157 422 IPR038718 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2293 Ssu-Chr2 79871751 79877361 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2293 178 651 RAD5 or RAD16-like Gene Family AT3G16600 24.352 1.17e-31 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Ssu2g2293 SNF2_N 2.6e-64 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2293 K19001 - gmx:100777687 1355.12