Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2291 ATGGGGGATTTCAACAACAACGATGCCTTCATGCGCAACCAAAACGCCGCCGTTCAGGCCCGCACCAAGGCCCAGAACCGTTCCAACGTCCTTCAGCTCAAACTGATTGGACAGAGTCACCCAACGGGTCTCACAGCGAACCTGTTGAAGCTCTTCGAGCCTAGGCCTCCGTTGGAGTACAAGCCGCCTCCAGAGAAACGGAAATGTCCACCGTTAACAGGGATGGCACAATTTGTGAGCAAGTTTGCCGAGCCTGGCGATCCTGAGTATGCTCCACCCGTTCCTGAAACCGAAACTCCTGCACAAAAAAGAGCCAGAATACACAAGCTAAGACTAGAAAAGGGAGCTGCAAAGGCTGCTGAGGAGCTTGAAAAATATGATCCACATAATGACCCAAATATATCTGGAGATCCATACAAAACATTGTTTGTGGCTAAACTCAGTTACGAGACCACTGAGAGCAGAATCAAGAGGGAGTTTGAGTCATATGGTCCAATCAAACGGGTTCGATTAGTTGCTGACAAAGAGACAAACAAGCCCAAGGGTTATGCTTTCATTGAGTATCTGCATACAAGAGACATGAAAGCTGCTTATAAACAAGCTGATGGTAGGAAAATTGATGGTAGAAGGGTGCTTGTGGATGTTGAGCGTGGGAGGACTGTTCCAAATTGGAGACCTCGCCGCCTCGGTGGTGGGCTTGGTACTACTAGAGTTGGGGGTGAAGAATCTAATCAGCGACATTCTGGGAGgGAGCAACAGCAGTCTCGTTCTGAAGAACCGAGAGGGCGGGAGGAGCGACATGGtgatagAGACAGGGAAATATCACGTGAAAGAGGTAGGGACAGAGATAGAGAGCGGGAGCAATCACGGGAGCATTCTCATGAAAGGGTCAGGGATCGTGATTATAGAGAGGATAGGCACCACAGAGACCGAGATAGGACTCGGGACAGAGACAGAGACAGGGAAAGAGACAGAGATCGTGGACGTGATCGAGATAGAACACGTGATCGGGATCGAGATCGTGACCGAGAAAGGGACCGTGATCGGGATCGACATCGTGAGAGGGATAGAGATTATGAAGTTGGGGACACCGATCGAGGACGTTCACGTGATAGGGAGTCTGATTATGATCGTGTTGAATCTAAACATGAGAGGGACCAACATGGGGAAAGGAATCGTGACCATGAGCCTGAGGATGATCGTGGTAGGTATAACCAGTATGAGTATGGACATAGGCATGCAGACCCTGAGCAGTATGACCACTACAGTCATGGAGATGACCGTGGTGATCATTACAACCAGTATCCTGACCATGATAAGATGGAAGAAGACTACCATGCAGGACATGCAACATCTGAATCACATGAAAAGGAGAAAACTCATGATATGGATCGTGACTATCGACGCTCAGAGAGATCTCATTCCCGGGAGTATGGTTACTAG 1443 0.4879 MGDFNNNDAFMRNQNAAVQARTKAQNRSNVLQLKLIGQSHPTGLTANLLKLFEPRPPLEYKPPPEKRKCPPLTGMAQFVSKFAEPGDPEYAPPVPETETPAQKRARIHKLRLEKGAAKAAEELEKYDPHNDPNISGDPYKTLFVAKLSYETTESRIKREFESYGPIKRVRLVADKETNKPKGYAFIEYLHTRDMKAAYKQADGRKIDGRRVLVDVERGRTVPNWRPRRLGGGLGTTRVGGEESNQRHSGREQQQSRSEEPRGREERHGDRDREISRERGRDRDREREQSREHSHERVRDRDYREDRHHRDRDRTRDRDRDRERDRDRGRDRDRTRDRDRDRDRERDRDRDRHRERDRDYEVGDTDRGRSRDRESDYDRVESKHERDQHGERNRDHEPEDDRGRYNQYEYGHRHADPEQYDHYSHGDDRGDHYNQYPDHDKMEEDYHAGHATSESHEKEKTHDMDRDYRRSERSHSREYGY 480
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2291 480 MobiDBLite consensus disorder prediction 222 480 - -
Ssu2g2291 480 Pfam U1 small nuclear ribonucleoprotein of 70kDa MW N terminal 43 131 IPR022023 -
Ssu2g2291 480 SMART rrm1_1 141 214 IPR000504 GO:0003723
Ssu2g2291 480 CDD RRM_snRNP70 139 229 IPR034143 GO:0030619
Ssu2g2291 480 PANTHER - 1 359 - -
Ssu2g2291 480 Gene3D - 127 252 IPR012677 -
Ssu2g2291 480 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 140 218 IPR000504 GO:0003723
Ssu2g2291 480 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 142 211 IPR000504 GO:0003723
Ssu2g2291 480 SUPERFAMILY RNA-binding domain, RBD 128 244 IPR035979 GO:0003676
Ssu2g2291 480 MobiDBLite consensus disorder prediction 243 480 - -
Ssu2g2291 480 MobiDBLite consensus disorder prediction 83 104 - -
Ssu2g2291 480 PANTHER U1 SMALL NUCLEAR RIBONUCLEOPROTEIN 70 KD 1 359 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2291 Ssu-Chr2 79837513 79841768 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2291 142 188 C2H2 Transcription Factor Family AT2G19380 40.426 7.54e-07 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2291 K11093 - gmx:100814484 609.372