Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2290 ATGTACACAGGGAATAACTATTACAACAGCGGGCAACACCCGAATAATTATTACGGAGGTCCACACGGGGACCATGTTGTGAGGGTACAAAATGGAATGGGTCCTAGTGGTGGCGGGTGGggtgcaccaccaccacctcctccgTTGATGAATAGTGCTGAAATGAGCTCTAATTACTCGACGGGACCACCCCCTTTGCCTCCTCCCTCACCAACCCTTGCTCTAGGCCTCAAAGGGGGCACCTTCGCTTATGAGGAACTAGCAGCTGCCACCAACGGATTCGCCGATGCAAATTTGATAGGACAGGGTGGCTTCGGTTATGTCCATAAGGGTGTGTTGCCTAATGGAAAGGAAGTGGCAGTTAAGAGTCTAAAATCAGGTAGTGGGCAAGGAGAGCGAGAGTTCCAAGCTGAGATTGACATCATTAGTCGCGTCCATCATCGCCATCTCGTGTCACTTGTTGGATACTCTATTTCTGGTGGCCAGAGAATGTTGGTCTATGAATTTATTCCCAATAACACATTGGAGTATCATCTTCATGGAAAGGGTAGGCCTACCATGGATTGGCCAACTAGAATGCGGATTGCAATAGGATCCGCTAAAGGGCTTGCCTATCTTCATGAGGACTGTCATCCTCGCATAATCCATCGTGATATTAAAGCTGCCAATGTCCTTATTGATGACAGCTTCGAAGCAAAGGTTGCTGATTTTGGATTGGCCAAGTTGACTACTGACAACAATACTCATGTTTCGACTCGTGTCATGGGAACCTTCGGGTACCTAGCCCCTGAATACGCATCAAGTGGAAAATTGACTGAGAAATCTGACGTTTTCTCATTTGGGGTCATGCTATTGGAACTCATAACTGGGAAGCGACCTGTGGATCACACAAATGCCATGGACGACAGCCTAGTAGACTGGGCTCGACCACTACTGACTCGTGGACTGGAGGAGGATGGCAACTTTGGAGAGTTAGTTGATGCATTTTTGGAGGGAAACTACAATCCTCAAGAACTGCCAAGGATGGCAGCTTGTGCTGCTGCTAGCATTCGTCATTCTGCCAGGAAGCGTCCAAAAATGAGCCAGATTGTAAGAATATTGGAAGGAGATGTCTCACTGGATGACTTGAAAGATGGGATTAAGTCGGGGCACAATGCTGTTTTCAATTCTTCTGGGAGCTCAGATCAGTATGATACAATGCAATACAATGCTGATTTACAAAAGTTTAGAAAGGCAGTGTTTTCTAATAGCACGGAATTTGGCACCAGCAGTGGCTCTAGTAGTGACATGAGCCAAAAGCAGCAACGGCTTTAG 1314 0.4589 MYTGNNYYNSGQHPNNYYGGPHGDHVVRVQNGMGPSGGGWGAPPPPPPLMNSAEMSSNYSTGPPPLPPPSPTLALGLKGGTFAYEELAAATNGFADANLIGQGGFGYVHKGVLPNGKEVAVKSLKSGSGQGEREFQAEIDIISRVHHRHLVSLVGYSISGGQRMLVYEFIPNNTLEYHLHGKGRPTMDWPTRMRIAIGSAKGLAYLHEDCHPRIIHRDIKAANVLIDDSFEAKVADFGLAKLTTDNNTHVSTRVMGTFGYLAPEYASSGKLTEKSDVFSFGVMLLELITGKRPVDHTNAMDDSLVDWARPLLTRGLEEDGNFGELVDAFLEGNYNPQELPRMAACAAASIRHSARKRPKMSQIVRILEGDVSLDDLKDGIKSGHNAVFNSSGSSDQYDTMQYNADLQKFRKAVFSNSTEFGTSSGSSSDMSQKQQRL 437
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2290 437 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 4 431 - -
Ssu2g2290 437 ProSitePatterns Protein kinases ATP-binding region signature. 100 122 IPR017441 GO:0005524
Ssu2g2290 437 PANTHER RECEPTOR-LIKE KINASE 4 431 - -
Ssu2g2290 437 Gene3D Phosphorylase Kinase; domain 1 74 169 - -
Ssu2g2290 437 Gene3D Transferase(Phosphotransferase) domain 1 170 381 - -
Ssu2g2290 437 Pfam Protein tyrosine and serine/threonine kinase 99 299 IPR001245 GO:0004672|GO:0006468
Ssu2g2290 437 ProSiteProfiles Protein kinase domain profile. 94 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2290 437 ProSitePatterns Serine/Threonine protein kinases active-site signature. 214 226 IPR008271 GO:0004672|GO:0006468
Ssu2g2290 437 SUPERFAMILY Protein kinase-like (PK-like) 74 367 IPR011009 -
Ssu2g2290 437 SMART serkin_6 94 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2290 437 MobiDBLite consensus disorder prediction 15 69 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2290 Ssu-Chr2 79815356 79817647 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2290 82 428 Trihelix Transcription Factor Family AT1G70460 61.143 3.84e-148 436
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Ssu2g2290 PK_Tyr_Ser-Thr 6.4e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2290 - - gmx:100777163 759.214
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2290 2 79815356 79817647 Ssu6g1981 6 36079560 36083479 PCT