Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2282 ATGCCGGTTGATTTGGACAATGTTTCCACAGCTTCAGGGGAAGCTAGCGTGTCTTCCTCTGGCAATCAGACAGTGCCCCCAAAACCCGTAACAAAGAAGAAGCGAAACCTTCCAGGAATGCCAGATCCGGATGCGGAGGTGATTGCTTTGTCTCCGAAGACCCTGATGGCGACGAACCGGTTCGTGTGTGAAATTTGCAACAAGGGGTTTCAGAGGGACCAGAACCTTCAGCTTCATCGGCGGGGTCACAATCTGCCGTGGAAGCTGAGGCAGAGGTCGAGCAAGGAGGTGAGGAAGAGGGTGTACGTGTGTCCCGAGCCGACGTGCGTTCACCACGACCCTTCTAGGGCGCTGGGGGATCTCACGGGGATTAAGAAACACTTCTGCAGGAAACACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAATACGCGGTTCAATCCGATTGGAAGGCTCACTCCAAGATTTGCGGCACCCGAGAGTATAAATGCGATTGTGGCACTTTGTTCTCGAGGAGGGATAGCTTCATCACGCATAGGGCCTTTTGTGATGCGTTGGCAGAGGAAAGTGCGAGATCTCAGACTCAGACTGTTGCGAAGGCTAGTTCCGAGTCAGATTCGAAGGCTGTGACCGGTGAATCATCGCCTCCgacggcggcggcggcggtggCGGCTCCGCCTCCACCGCCACCTCCGGCCCTGCCTGCTAGTTCTCAGTCAAACAGTGTTGTTGTACCATCATCTGCTTTGCAGACACAAAATCCAGAGTTGCCAGAAAATTCCCCACAAATCATAGAAGAACCGCAGGCCAATACTGCGATGCATGGGAGCTGTAGCAGCACCAGCACCAGCTCAACAAGCAATAGCAATAGTGGTGCTAGCAGCAGTGTATTTGCAAGCTTGTTTGCTTCATCAACAGCATCTGCAACCGCAAGCCTCCAACCTCAAACACCAGCATTCACTGACCTAATTAGGGCCATGGGGCATCCAGATCATCCAGCAGACCTCTCAAGGCCTTCATCTTCGGAGCCCATTTCTCTGTGCCTTGCTACCAATCACGGCTCATCCATTTTTGGAACTGGAGGGCAGGAGCGACGCCAGTATGCCCCATCGCCACAGCCAGCCATGTCTGCCACCGCATTGCTGCAGAAAGCTGCTCAAATGGGTGCAGCTGCAACAAACGCCTCTTTTCTTCGTGGGTTAGGCATAGTGTCATCTTCTGCATCAACCTCATCGGGTCAGCAAGATTGTTTGCAATGGGGTCAGCAGCCAGTGGAACCAGAGAGTGCCTCAGTTCCTGCAGGTCTTGGACTCGGGCTTCCCTGTGACAGTAGCTCTGGACTTAAGGAGTTAATGATGGGGAATCCCTCCATGTTTGGTCCAAAGCAGACCACCCTTGATTTTCTTGGGTTGGGGATGGCTGCTGGGGGCACCCCCGGTGGAGGCTTATCGGCTCTCATCACCTCCATCGGTGGCGGTCTGGATGTTACTGCTGCGGCGGCATCCTTTGGTAGTGGAGAATTCCCTGGCAAAGATATTGGGAGGAGCACTTGA 1560 0.5295 MPVDLDNVSTASGEASVSSSGNQTVPPKPVTKKKRNLPGMPDPDAEVIALSPKTLMATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLRQRSSKEVRKRVYVCPEPTCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKICGTREYKCDCGTLFSRRDSFITHRAFCDALAEESARSQTQTVAKASSESDSKAVTGESSPPTAAAAVAAPPPPPPPALPASSQSNSVVVPSSALQTQNPELPENSPQIIEEPQANTAMHGSCSSTSTSSTSNSNSGASSSVFASLFASSTASATASLQPQTPAFTDLIRAMGHPDHPADLSRPSSSEPISLCLATNHGSSIFGTGGQERRQYAPSPQPAMSATALLQKAAQMGAAATNASFLRGLGIVSSSASTSSGQQDCLQWGQQPVEPESASVPAGLGLGLPCDSSSGLKELMMGNPSMFGPKQTTLDFLGLGMAAGGTPGGGLSALITSIGGGLDVTAAAASFGSGEFPGKDIGRST 519
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2282 519 MobiDBLite consensus disorder prediction 223 238 - -
Ssu2g2282 519 Gene3D Classic Zinc Finger 41 107 - -
Ssu2g2282 519 MobiDBLite consensus disorder prediction 195 296 - -
Ssu2g2282 519 ProSiteProfiles Zinc finger C2H2 type domain profile. 61 83 IPR013087 -
Ssu2g2282 519 SUPERFAMILY beta-beta-alpha zinc fingers 60 157 IPR036236 -
Ssu2g2282 519 MobiDBLite consensus disorder prediction 1 42 - -
Ssu2g2282 519 Gene3D Classic Zinc Finger 115 196 - -
Ssu2g2282 519 MobiDBLite consensus disorder prediction 195 216 - -
Ssu2g2282 519 MobiDBLite consensus disorder prediction 9 29 - -
Ssu2g2282 519 SMART c2h2final6 102 132 IPR013087 -
Ssu2g2282 519 SMART c2h2final6 61 83 IPR013087 -
Ssu2g2282 519 SMART c2h2final6 137 157 IPR013087 -
Ssu2g2282 519 MobiDBLite consensus disorder prediction 239 296 - -
Ssu2g2282 519 PANTHER PROTEIN INDETERMINATE-DOMAIN 2-LIKE 7 518 - -
Ssu2g2282 519 ProSitePatterns Zinc finger C2H2 type domain signature. 63 83 IPR013087 -
Ssu2g2282 519 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 7 518 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2282 Ssu-Chr2 79653462 79655804 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2282 1 519 IDZ Gene Family AT5G66730 60.521 0.0 549
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Ssu2g2282 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2282 K25869 - gmx:100806404 842.802
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2282 2 79653462 79655804 Ssu6g1976 6 35885079 35887421 PCT