Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2274 ATGAGAGTTCCCGTTCCCTCATCCCCACAGGCCAACCCAAAACCCAGCAACGTAGTCCATACCATTACCCTTCCCAACCTCAACAACACAGCCCTGTGCTACGAGCCCACTTCCGTCCTCGACCTGTGTCGGAGCCCGGGCACAGTCCCCGAAAAGCCCACCGATCAGTCCGTCGCCGTGACCAACTCCCAAGAGTGCTTCGACCTGGACGACCATGCGTTGCACAACTTCGACTGGGACTCCATCATGAAGGACCTAGGCCTACACGACGACTCGGGCACCCCCGTTTTGAAGACTATTCTCCACCCcgacgacaacaacaacaacccaTGCGACGACTTCACACCCTTCGACCACGCGCTTGAATTCACCACTCTCTCCGACACGTACTCCAACCAAACCCTCGCTTACAACTACCTCGCCAACACCACACTCGACCACTTGCTTCACGACTCCAACCACCACAGCGACTTCGACTTCATCGAAGAGCTCATCTGCGCCGCCGATTGCTTCGACACCAAGCAGTTACACGTGGCGCAAGTGATATTGGAGCGGCTCAATCAACGGCTACGATCCCCCGCGGGAAAACCGCTCCAACGAGCGGCGTTTTACTTCAAAGAAGCTCTCCAGTCTCTTCTCTCCGGTTCGAACCGGACGCCGAGGCTTTTGTCGTTTGTGGAAATCGTGCACAGTATCAGAGCCTTCAAGGCCTTCTCGGGAATCTCACCAATCCCAATGTTCTCGATCTTCACCACCAATCAAGTGGTTCTCGATCACGCTGCGTCGTCCTTCATGCACGTCATCGACTTCGACATCGGCCTCGGGATCCAATACGCGTCTCTCATGAGGGAGATTGTGGAGAAGGCGGCGGAGCCGCCGGTGCTCCGAATCACCGCCGTGGTTCCCGAAGAGTTCGCCGTGGAGAGCACGCTCGTCAGCGACAACCTCGCACAGTTCGCTCTCGAACTCAGGATCCGAGTCCAGGTTGAGTTCGTGCCGCTGAGAACCTTCGAGACGCTCTCCTTCAAGGCGGTGAGGTTCGTCGACGGCGAGAAGACCGCCGTGCTCTTGTCGCCGGAGATTTTTCGCCACCTCGGCAACGCCGCCGCGTTCTTGGCGAACGTGCGGAGGGTATCGCCTGTCGTGGTGGTTTTCGTGGACGGTGAGGGGTGGGCGGAGGCGGCGACGGCGACGGCTTCGTCATTCCGGCTCGGCGTTGTGAGCAGTTTGGAGTACTACTCGATGATGCTGGAGTCGCTGGATGCGTCGACGGTGGGGGGAGGAGGCGAGTGGGTGAGGAGAATCGAGATGATGCAGGTGCGGCCGAAGATTTTGGCGGCGGTGGAGAGAGCGTGGCGGCAGATGCCGCCGTGGAGGGAGGCGTTTTACGGTGCCGGAATGAGGCCGGTTCAGTTGAGCCAGTTCGCGGATTTTCAAGCGGAGTGCTTGTTGGCCAAGTCACGAATCAGAGGCTTCCGCGTGGCAAAACGTCAGAACGAACTGGTGTTGGTTTGGCACGATCGGGTTATGGTTGCCACGTCAGCTTGGCGCTGTTAG 1557 0.5793 MRVPVPSSPQANPKPSNVVHTITLPNLNNTALCYEPTSVLDLCRSPGTVPEKPTDQSVAVTNSQECFDLDDHALHNFDWDSIMKDLGLHDDSGTPVLKTILHPDDNNNNPCDDFTPFDHALEFTTLSDTYSNQTLAYNYLANTTLDHLLHDSNHHSDFDFIEELICAADCFDTKQLHVAQVILERLNQRLRSPAGKPLQRAAFYFKEALQSLLSGSNRTPRLLSFVEIVHSIRAFKAFSGISPIPMFSIFTTNQVVLDHAASSFMHVIDFDIGLGIQYASLMREIVEKAAEPPVLRITAVVPEEFAVESTLVSDNLAQFALELRIRVQVEFVPLRTFETLSFKAVRFVDGEKTAVLLSPEIFRHLGNAAAFLANVRRVSPVVVVFVDGEGWAEAATATASSFRLGVVSSLEYYSMMLESLDASTVGGGGEWVRRIEMMQVRPKILAAVERAWRQMPPWREAFYGAGMRPVQLSQFADFQAECLLAKSRIRGFRVAKRQNELVLVWHDRVMVATSAWRC 518
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2274 518 PANTHER SCARECROW-LIKE PROTEIN 15 7 517 - -
Ssu2g2274 518 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 7 517 IPR005202 -
Ssu2g2274 518 ProSiteProfiles GRAS family profile. 151 517 IPR005202 -
Ssu2g2274 518 Pfam GRAS domain family 161 517 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2274 Ssu-Chr2 79606148 79607704 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2274 69 517 GRAS Transcription Factor Family AT4G36710 55.297 1.28e-162 469
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Ssu2g2274 GRAS 2.8e-80 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2274 - - gmx:100807470 826.239
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2274 2 79606148 79607704 Ssu6g1972 6 35801733 35803337 PCT