LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g2272	ATGCGGCCGACAGCAACGCCATCATCAAGTATAGCAGACAACGAGTGGAAACCGGAGGCAAAGTACCGGACAAGAGCAGAGAGAGAGATAGTGTGTGCGCGTATGGCAACTGCCATACCGCTGGCACCTTCATATCCTGATTGGTCAAGCTCGATGCAGGCTTATTATGCTCCTGGAGCAACCCCGCCTGCTTTTTTTGCCTCAACTGTTGCTTCCCCAACTCCCCATCCCTATATGTGGGGAAGCCAGcATCCATTAATTCCATCATATGGTACTCCTGTACCATATCCAGCTATATATCCTCCTGGGAATGTCTATGCTCATCATAGCATGGCAACGCATGGTACAGAGTTTGTAGGCAAGGGGCCTGATGGAAAAGATCGAGTTTCTGCCAAAAGTTCGAAGGGAATGTCTGCAAATACAGGTTGCAAAGCATTAGACAATAGAAAGGCAGGCTCAGGGTCTGGAAATGATGGCGTCTCACAAAGTGCTGAAAGTGGTTCAGAGGGATCTTCAGATGCTAGTGATGAGAATATTAACCAACAGGAATCAGCTACAAACAAGAAAGGGAGTTTTGACCAAATGCTAGTTGATGGAGCCAATGCACAGAACAATTCTGTGGGGGCCACTCCTCAATCTTCAGTACCTGGAAGGCCCGTTGGGTCAATGTCTGCAACCAGTCTTAATATTGGAATGGACTTGTGGAATGCATCTCCTGCTGGTGCCGAAGCTGCCAAAATGAGACACAATCAATCTGCTGCCTCAGGAGTTGTTACTCCTCCAACCATAATGGGACGTGAAGTTGCGCTTGGTGAAAAGTGGATACAAGACGAACGTGAGCTGAAAAGACAGAAGAGGAAACAGTCTAATAGAGAGTCAGCTAGGAGGTCAAGACTACGCAAGCAGGCTGAGTGTGAAGAGTTACAGAAGAGGCTGGAGTCGCTGGGAAGTGAGAATCGAACTCTCAGAGAAGAGCTTCAGGGAGTATCTGAAGAATGCAAGAAACTTACATCTGAAAATAATTCCATCAAGGAAGAGTTGGAACGGTTGTGTGGGCCAGAAGCAGTTGCTAACCTTGAATAA	1083	0.4728	MRPTATPSSSIADNEWKPEAKYRTRAEREIVCARMATAIPLAPSYPDWSSSMQAYYAPGATPPAFFASTVASPTPHPYMWGSQHPLIPSYGTPVPYPAIYPPGNVYAHHSMATHGTEFVGKGPDGKDRVSAKSSKGMSANTGCKALDNRKAGSGSGNDGVSQSAESGSEGSSDASDENINQQESATNKKGSFDQMLVDGANAQNNSVGATPQSSVPGRPVGSMSATSLNIGMDLWNASPAGAEAAKMRHNQSAASGVVTPPTIMGREVALGEKWIQDERELKRQKRKQSNRESARRSRLRKQAECEELQKRLESLGSENRTLREELQGVSEECKKLTSENNSIKEELERLCGPEAVANLE	360

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Ssu2g2272	360	MobiDBLite	consensus disorder prediction	295	339	-	-
	Ssu2g2272	360	MobiDBLite	consensus disorder prediction	1	20	-	-
	Ssu2g2272	360	SUPERFAMILY	Leucine zipper domain	281	337	IPR046347	GO:0003700\|GO:0006355
	Ssu2g2272	360	Pfam	G-box binding protein MFMR	23	111	IPR012900	-
	Ssu2g2272	360	ProSitePatterns	Basic-leucine zipper (bZIP) domain signature.	285	300	IPR004827	GO:0003700\|GO:0006355
	Ssu2g2272	360	MobiDBLite	consensus disorder prediction	154	189	-	-
	Ssu2g2272	360	PANTHER	G-BOX-BINDING FACTOR 1	37	360	-	-
	Ssu2g2272	360	Pfam	bZIP transcription factor	278	340	IPR004827	GO:0003700\|GO:0006355
	Ssu2g2272	360	ProSiteProfiles	Basic-leucine zipper (bZIP) domain profile.	280	343	IPR004827	GO:0003700\|GO:0006355
	Ssu2g2272	360	Coils	Coil	291	346	-	-
	Ssu2g2272	360	SMART	brlzneu	278	342	IPR004827	GO:0003700\|GO:0006355
	Ssu2g2272	360	MobiDBLite	consensus disorder prediction	279	339	-	-
	Ssu2g2272	360	CDD	bZIP_plant_GBF1	283	333	IPR045314	GO:0003700\|GO:0006355
	Ssu2g2272	360	MobiDBLite	consensus disorder prediction	117	189	-	-
	Ssu2g2272	360	Gene3D	-	281	335	-	-
	Ssu2g2272	360	PANTHER	G-BOX-BINDING FACTOR 3-RELATED	37	360	IPR044827	GO:0003700\|GO:0006355\|GO:0043565
	Ssu2g2272	360	MobiDBLite	consensus disorder prediction	202	224	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g2272	Ssu-Chr2	79593415	79599696	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g2272	36	360	bZIP Transcription Factor Family	AT4G36730	54.268	7.78e-98	291

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	bZIP	Ssu2g2272		MFMR	5.3e-28	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g2272	K09060		-	gmx:100808533	538.88