Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2271 ATGAATCATCGACCTTGCCAAGACCCGATGATGTTCATCTCTCAGTTATACCCTGCTGAAGCATACACTCATGAAATAATTGCTCAACAAGGGGAGAAGAAACCAAGACGCCGTCGTAATAAGAAGAACAAAGGAGGAGAAACCGCGGAAGCCAACAAGAAGAGGAAGCTTAGTGTGGAGCAAGTTAATCTACTTGAGCAAAACTTTGGAAATGAGCATAAACTTGAGTCCGAAAGGAAGGACAGGCTCGCAATGGAGCTTGGTTTGGACCCTCGCCAAGTTGCTGTGTGGTTTCAAAACAGAAGAGCTCGGTGGAAGAACAAAAAATTGGAAGAAGAGTACTCAAACCTTAAAAAAACCCATGATGCAACCTTGCTAGAGAAATGCCGCCTGGAGAGCGAGGTGTTGAAGCTCAAAGAACAACTTTCGGAGGCAGAGAAGGAGATTCAAAGGCTGCTGGAGAGTGCTGATAGAGTCCCAAGTAACAGTTCCAGTTCGTCACAGTCACAATCAATGGAAGCGGTGGACCCACCATTTTTTGGGGATTTTGGAGTTGATGGATATGATGATGATGTGTATTACGTGCCTGAGACCCATTATATGAATGGCATGGAATGGATTAATCTGTACATGTAA 636 0.445 MNHRPCQDPMMFISQLYPAEAYTHEIIAQQGEKKPRRRRNKKNKGGETAEANKKRKLSVEQVNLLEQNFGNEHKLESERKDRLAMELGLDPRQVAVWFQNRRARWKNKKLEEEYSNLKKTHDATLLEKCRLESEVLKLKEQLSEAEKEIQRLLESADRVPSNSSSSSQSQSMEAVDPPFFGDFGVDGYDDDVYYVPETHYMNGMEWINLYM 211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2271 211 SUPERFAMILY Homeodomain-like 52 116 IPR009057 -
Ssu2g2271 211 Pfam Homeodomain 53 107 IPR001356 GO:0003677
Ssu2g2271 211 Gene3D - 46 118 - -
Ssu2g2271 211 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-40-LIKE 7 210 - -
Ssu2g2271 211 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 7 210 IPR045224 GO:0003700
Ssu2g2271 211 MobiDBLite consensus disorder prediction 156 173 - -
Ssu2g2271 211 MobiDBLite consensus disorder prediction 153 173 - -
Ssu2g2271 211 PRINTS Lambda-repressor HTH signature 88 104 IPR000047 GO:0003677
Ssu2g2271 211 PRINTS Lambda-repressor HTH signature 79 88 IPR000047 GO:0003677
Ssu2g2271 211 ProSiteProfiles 'Homeobox' domain profile. 48 108 IPR001356 GO:0003677
Ssu2g2271 211 SMART HOX_1 51 112 IPR001356 GO:0003677
Ssu2g2271 211 CDD homeodomain 53 109 IPR001356 GO:0003677
Ssu2g2271 211 ProSitePatterns 'Homeobox' domain signature. 83 106 IPR017970 GO:0000981|GO:0006355
Ssu2g2271 211 MobiDBLite consensus disorder prediction 29 55 - -
Ssu2g2271 211 Coils Coil 100 159 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2271 Ssu-Chr2 79577801 79579556 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2271 1 211 Homeobox Transcription Factor Family AT4G36740 57.399 5.71e-73 218
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Ssu2g2271 Homeodomain 1e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2271 K09338 - gmx:100809616 319.701