Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2262 ATGGGGATCGTGTCGCCGTTAAGAGGACTCGAGAAGAGCAAGATGGTTCTCCCCATTGCGGTTGAGGATGTTAAGCGAGAAGTCAAAATATTGAAAGAACTGACAGGCCATGAAAATGTGGTTCAGTTCTATAATGCTTTTGAGGATGATTCATATGTGTACATAGTTATGGAGTTATGTGAGGGTGGAGAACTGCTAGATCGGATATTGGCCAAGAAGGACAGTCGTTATACCGAAAAAGATGCGGCTGTGGTTGTAAGGCAGATGCTTAAGGTTGCAGCTGAGTGTCATTTGCATGGGTTGGTCCATCGGGACATGAAACCAGAGaattttcttttcaaatcaacCAAAGAAGATTCGCCTTTAAAGGCTACTGATTTTGGTTTGTCTGATTTCATTAAACCTGGAAAGAGGTTTCAAGATATTGTTGGCAGTGCTTACTATGTTGCACCAGAAGTGTTAAAACGGAAGTCAGGTCCCGAGTCAGATGTATGGAGTATTGGTGTAATTACATACATATTGCTTTGTGGGAGACGCCCATTTTGGGATAAGACGGAGGATGGTATCTTCAAGGAGGTCTTACGGAACAAGCCTGATTTCCGGCGGAAACCATGGCCAACCATAAGCAATGCTGCAAAAGATTTTGTGAAGAAATTATTGGTAAAAGATCCTCGGGCAAGATATACTGCTGCTCAGGCTCTATCACATCCATGGGTTAGAGAAGGAGGAGAGGCATTAGAGATTCCTATTGATATATCTGTCCTGAACAACATGCGACAGTTTGTGAAGTATAGTCAGTTGAAACAATTTGCATTAAGGGCATTGGCTAGCACACTTAATGAAGAAGAGTTGTCTGATCTAAAAGATCAGTTTGATGCAATAGATGTGGACAAAAATGGTTCTATTAGTCTTGAAGAGATGAGACAGGCTCTTGCTAAAGATCTCCCTTGGAAGTTAAAAGAATCACGTGTGCTAGAGATATTGCAAGCGATAGACAGCAACACAGATGGGCTAGTGGATTTCACCGAGTTTGTGGCAGCTACATTACATGTACATCAATTGGAGGAACATGATTCTGATAGGTGGCAGCAACGGTCACAGGCTGCTTTTGAGAAATTTGACTTGGATAAGAATGGCTATATTACTCCAGATGAACTTAGAATGCATACGGGTTTGAGAGGCTCCATTGATCCATTGCTCGAGGAAGCTGATATTGATAAAGATGGGAAAATCAGCTTACCAGAATTTCGAAGACTTCTAAGAACTGCAAGCATTGGTTCTCGAAACGATTTTGTGTTTAAGTTTAGTCTGGAGGACCATGTCAAGAGGTGTTCAATAGTGTGTGTAGACCCTGCATGGATTGGCTTCAGGAACCTCTTGCTGACGATGCAGATTGGGACGTGCCAAGGAAGCCGGGGACATGGTGCATGCAAAGCTATGATGTCTGGACCTAAGTGGGAAGATGCAGGGGATAAAGAAGGGGAGCTAGCATTCCTCAGAAAAGTTAATGAACATTTTCTGGAGATAATTGATGTAGTGCTTTAa 1545 0.4227 MGIVSPLRGLEKSKMVLPIAVEDVKREVKILKELTGHENVVQFYNAFEDDSYVYIVMELCEGGELLDRILAKKDSRYTEKDAAVVVRQMLKVAAECHLHGLVHRDMKPENFLFKSTKEDSPLKATDFGLSDFIKPGKRFQDIVGSAYYVAPEVLKRKSGPESDVWSIGVITYILLCGRRPFWDKTEDGIFKEVLRNKPDFRRKPWPTISNAAKDFVKKLLVKDPRARYTAAQALSHPWVREGGEALEIPIDISVLNNMRQFVKYSQLKQFALRALASTLNEEELSDLKDQFDAIDVDKNGSISLEEMRQALAKDLPWKLKESRVLEILQAIDSNTDGLVDFTEFVAATLHVHQLEEHDSDRWQQRSQAAFEKFDLDKNGYITPDELRMHTGLRGSIDPLLEEADIDKDGKISLPEFRRLLRTASIGSRNDFVFKFSLEDHVKRCSIVCVDPAWIGFRNLLLTMQIGTCQGSRGHGACKAMMSGPKWEDAGDKEGELAFLRKVNEHFLEIIDVVL 514
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2262 514 ProSitePatterns EF-hand calcium-binding domain. 374 386 IPR018247 -
Ssu2g2262 514 ProSiteProfiles EF-hand calcium-binding domain profile. 399 426 IPR002048 GO:0005509
Ssu2g2262 514 SUPERFAMILY EF-hand 268 422 IPR011992 -
Ssu2g2262 514 ProSiteProfiles EF-hand calcium-binding domain profile. 361 396 IPR002048 GO:0005509
Ssu2g2262 514 Pfam Protein kinase domain 22 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2262 514 SMART serkin_6 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2262 514 ProSitePatterns EF-hand calcium-binding domain. 332 344 IPR018247 -
Ssu2g2262 514 Pfam EF-hand domain pair 285 348 IPR002048 GO:0005509
Ssu2g2262 514 Pfam EF-hand domain pair 367 420 IPR002048 GO:0005509
Ssu2g2262 514 ProSitePatterns Serine/Threonine protein kinases active-site signature. 101 113 IPR008271 GO:0004672|GO:0006468
Ssu2g2262 514 ProSitePatterns EF-hand calcium-binding domain. 295 307 IPR018247 -
Ssu2g2262 514 Gene3D - 261 419 - -
Ssu2g2262 514 Gene3D - 280 349 - -
Ssu2g2262 514 PANTHER SERINE/THREONINE-PROTEIN KINASE 9 430 - -
Ssu2g2262 514 ProSiteProfiles EF-hand calcium-binding domain profile. 319 354 IPR002048 GO:0005509
Ssu2g2262 514 PANTHER CALCIUM-DEPENDENT PROTEIN KINASE 28-LIKE 9 430 - -
Ssu2g2262 514 ProSiteProfiles Protein kinase domain profile. 1 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2262 514 ProSitePatterns EF-hand calcium-binding domain. 404 416 IPR018247 -
Ssu2g2262 514 ProSiteProfiles EF-hand calcium-binding domain profile. 282 317 IPR002048 GO:0005509
Ssu2g2262 514 Gene3D Phosphorylase Kinase; domain 1 8 64 - -
Ssu2g2262 514 CDD STKc_CAMK 14 238 - -
Ssu2g2262 514 Gene3D Transferase(Phosphotransferase) domain 1 65 260 - -
Ssu2g2262 514 SUPERFAMILY Protein kinase-like (PK-like) 17 260 IPR011009 -
Ssu2g2262 514 SMART efh_1 365 393 IPR002048 GO:0005509
Ssu2g2262 514 SMART efh_1 323 351 IPR002048 GO:0005509
Ssu2g2262 514 SMART efh_1 395 423 IPR002048 GO:0005509
Ssu2g2262 514 SMART efh_1 286 314 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2262 Ssu-Chr2 79382080 79389490 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2262 7 429 EF-hand Containing Proteins AT2G17890 86.525 0.0 762
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Ssu2g2262 Pkinase 3.6e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2262 K13412 - gmx:100817249 822.002