Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2261 ATGTTAGTAGTGGGGACCACACtcactcctctctctctctctcttcacttttatttatataagaacCCTAACCCCAATTTCGTTATTCGCATTCCATTCTCAATTCCCAAATCTCAACTTCTCTCAACGACAGCGTATCGCATCATAACAAGCACTCAAGCAGCAAACATGATCTCCTCCGTCTCCTTTCCGGCGTCTCTTCCCGCCGCGAACTTCTGCGGCAACGCCGTGGCCTCGCCGTCGTGTCGAGTCAGATCCCGGCCAATAGTCGCCTTcgccaccgccaccgccaccgccGAAGCCCGCTCTTCATGGACGGAGCAACCGAGGCCCTCGTATCTGAACTCCTCTTGCTCATCGCTCTACGACATCCTCGGCATACCCGCCGGCGCCTCTGGCCAGGAAATCAAGGCGGCGTACCGGCGATTGGCCAGAGTCTGCCACCCGGACGTGGCGGCGATCGACCGGAAAAACTCCTCGGCCGACGAATTCATGAAGATCCACGCCGCGTACTCCACCCTCTCGGACCCTGACAAGCGCGCCAACTACGACCGGAGCCTATTCCGGCGACAACGGCCGTTGTCGACGGCGGCGGTGTTTTCCGGCTACACGAGGCGAAACTGGGAAACGGACCAGTGCTGGTAG 645 0.5302 MLVVGTTLTPLSLSLHFYLYKNPNPNFVIRIPFSIPKSQLLSTTAYRIITSTQAANMISSVSFPASLPAANFCGNAVASPSCRVRSRPIVAFATATATAEARSSWTEQPRPSYLNSSCSSLYDILGIPAGASGQEIKAAYRRLARVCHPDVAAIDRKNSSADEFMKIHAAYSTLSDPDKRANYDRSLFRRQRPLSTAAVFSGYTRRNWETDQCW 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2261 214 Gene3D DnaJ domain 111 206 IPR036869 -
Ssu2g2261 214 Pfam DnaJ domain 121 184 IPR001623 -
Ssu2g2261 214 CDD DnaJ 122 176 IPR001623 -
Ssu2g2261 214 PRINTS DnaJ domain signature 140 155 IPR001623 -
Ssu2g2261 214 PRINTS DnaJ domain signature 122 140 IPR001623 -
Ssu2g2261 214 PRINTS DnaJ domain signature 159 179 IPR001623 -
Ssu2g2261 214 ProSiteProfiles dnaJ domain profile. 120 187 IPR001623 -
Ssu2g2261 214 PANTHER - 57 214 - -
Ssu2g2261 214 SMART dnaj_3 119 179 IPR001623 -
Ssu2g2261 214 ProSitePatterns Nt-dnaJ domain signature. 164 183 IPR018253 -
Ssu2g2261 214 PANTHER DNAJ DOMAIN (PROKARYOTIC HEAT SHOCK PROTEIN)-RELATED 57 214 - -
Ssu2g2261 214 SUPERFAMILY Chaperone J-domain 117 190 IPR036869 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2261 Ssu-Chr2 79361463 79362107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2261 122 184 C2H2 Transcription Factor Family AT1G74250 41.791 2.45e-07 48.9