Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2260 ATGGGGGACATAGTGAAACAAATATTAGCGAAGCCGATCCAGCTGGCGGACCAAGTAACCAAAGCCGCCGACGAGGCCACCTCCTTCAAGCAGGAATGCGGCGAGCTCAAGTCCAAGACGGAGAAGCTCGCGGCGCTGCTCCGGCAGGCTGCGCGCGCGAGCTCTGACCTCTACGAGCGTCCCACGCGGCGGATCATCGAGGAAACCGAGCAGGTCCTCGACAAGGCTCTTTCCCTGGTCCTCAAGTGCCGCGGCAACGGCCTCATGAAGCGCGTGTTCACGCTCAACCCGGGCGCCGCGTTCCGCAAGGTCTCCTCCCACCTCGAGAACTCCGTCGGCGACGTGTCCTGGCTGCTCCGCGTCTCCGCCCCCGCCGACGACCGCGGCGGCGAGTACCTCGGCGGCCTCCCTCCGATCGCCGCCAACGAGCCCATCCTCTGTCTCATCTGGGAGCAGATCGCCGTCCTCCACACCGGCCCGGTGGAGGACCGCCCCGACGCCGCCGCGTCGCTGGTCTCCCTCGCCGTCGGCAGCCACCGCTACGGGAAGCTCATCATCGAGGAGGGCGGGGTGGGGCCGCTGCTGAAGCTCCTCAAGGAAGGGAAGCCAGAAGGGCAGGAGAACGCCGCACGTGCCATCGGTCTCCTCGGGCGTGACCCCGAGAGCGTCGAGCACGTGATCCACGTGGGCGCGTGCTCCGTCTTCGCCAAAGTCCTCAAAGAAGGTCCTATGAAAGTGCAAGCTGTCGTGGCCTGGGCCGTGTCGGAACTCGCCGCTAATCACCCCAAGTGTCAGGACCTCTTCGCGCAGCACAACATCATAAGAATACTCGTCGGTCACCTCGCATTTGAGACAGTCGAGGAGCATAGTAAGTACGCTATTGTCAGCTCCAAACCCACTTCCATCCACGCCGTCGTCATGGCAAGTAGCAATTCCAATAATTTGAAGAAGGAAAATCACGATCTCGACAGTGAAATTCAAACACGGATACCGCATCCCTTCGGTGAAAGATCACGAAATCTGCATAGAGTGATTACTAGTACCATCGCAATGCACGCTGCCGCCAAGCGAGGAAACGAATCGAATCCGAAACAGAATCAGAATCAGCATCACCAACGAAACTATTCACATTCGGGGATCAACATGAAAGGAAGGGACCTTGAGGACCCTGGGACTAAGGCTAACATGAAGGAAATGGCAGCGAGGGCTCTCTGGTATTTAGCGAAGGGTAACTCGCCTATTTGTCGTATCATTACTGAGTCAAGGGCGTTGTTGTGTTTTGCTGTTCTCCTTGAGAAGGGACCAGAACCTGTGCAGTACAATTCCGCGATGGCGGTGATGGAGATCACTGCGGTGGCAGAGAAAGATGCCGAGTTAAGGAAATCCGCGTTCAAGCCCAACTCTCCTGCTTGCAAAGCCGTTGTTGATCAAGTGGTTAAGATAATTGAGAAAGCGGATTCGGAGCTTCTGATTCCGTGCGTCAAGACGATTGGGAATTTGGCGAGGACGTTTAAGGCGACGGAGACAAGGATGATTGGGCCCCTGGCGAGGCTTCTTGACGAGAGGGAAGCGGAGGTGTCGAGGGAGGCGGCCATTGCGCTCACGAAATTCGCGTGCACGGAGAACTACCTTCACGTGGATCACGCCAAGGCGATTATAAGCGCGGGTGGGGCCAAGCACTTGATTCAGCTCGTGTATTTTGGAGAAGAGATGGTTCAGATTCCCGCGCTGGTTCTGCTCTCCTACATTGCAATGCACGTGCCGGACAGTGAGGAGCTTGCTCAGGCTGAGGTGCTGGGAGTGCTTGAATGGGCCTCCAAGCAGTCTTCCATCGCGCATGACGAGACACTCGAGGCCTTGTTGCTAGAGTCCAAGAGCAGGTTGGAGCTTTACCAGTCTAGAGGTCCAAGAGGGTTCCATAAATTGCATTTACATCagtag 1941 0.5714 MGDIVKQILAKPIQLADQVTKAADEATSFKQECGELKSKTEKLAALLRQAARASSDLYERPTRRIIEETEQVLDKALSLVLKCRGNGLMKRVFTLNPGAAFRKVSSHLENSVGDVSWLLRVSAPADDRGGEYLGGLPPIAANEPILCLIWEQIAVLHTGPVEDRPDAAASLVSLAVGSHRYGKLIIEEGGVGPLLKLLKEGKPEGQENAARAIGLLGRDPESVEHVIHVGACSVFAKVLKEGPMKVQAVVAWAVSELAANHPKCQDLFAQHNIIRILVGHLAFETVEEHSKYAIVSSKPTSIHAVVMASSNSNNLKKENHDLDSEIQTRIPHPFGERSRNLHRVITSTIAMHAAAKRGNESNPKQNQNQHHQRNYSHSGINMKGRDLEDPGTKANMKEMAARALWYLAKGNSPICRIITESRALLCFAVLLEKGPEPVQYNSAMAVMEITAVAEKDAELRKSAFKPNSPACKAVVDQVVKIIEKADSELLIPCVKTIGNLARTFKATETRMIGPLARLLDEREAEVSREAAIALTKFACTENYLHVDHAKAIISAGGAKHLIQLVYFGEEMVQIPALVLLSYIAMHVPDSEELAQAEVLGVLEWASKQSSIAHDETLEALLLESKSRLELYQSRGPRGFHKLHLHQ 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2260 646 MobiDBLite consensus disorder prediction 355 383 - -
Ssu2g2260 646 Pfam Armadillo/beta-catenin-like repeat 184 215 IPR000225 GO:0005515
Ssu2g2260 646 PANTHER ARMADILLO REPEAT ONLY 2 1 640 - -
Ssu2g2260 646 MobiDBLite consensus disorder prediction 359 379 - -
Ssu2g2260 646 Gene3D - 3 121 IPR036537 GO:0007166
Ssu2g2260 646 SMART arm_5 545 585 IPR000225 GO:0005515
Ssu2g2260 646 SMART arm_5 411 451 IPR000225 GO:0005515
Ssu2g2260 646 SMART arm_5 467 502 IPR000225 GO:0005515
Ssu2g2260 646 SMART arm_5 219 259 IPR000225 GO:0005515
Ssu2g2260 646 SMART arm_5 178 218 IPR000225 GO:0005515
Ssu2g2260 646 Coils Coil 36 56 - -
Ssu2g2260 646 Gene3D - 151 323 IPR011989 -
Ssu2g2260 646 SUPERFAMILY ARM repeat 155 605 IPR016024 -
Ssu2g2260 646 PANTHER ARMADILLO REPEAT ONLY 4 1 640 - -
Ssu2g2260 646 Gene3D - 369 624 IPR011989 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2260 Ssu-Chr2 79315187 79317127 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2260 153 278 U-box Gene Family AT2G23140 30.952 9.68e-06 47.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2260 - - gmx:100816188 1068.91