Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2250 ATGACTGCTTCAACTCGTTTCTCCACCACTTTAGTCACACTATGTTTCTTCCAATTCCTAGCAGGTTCGTATTCAACGACATTCACGATTGTGAACAAGTGCAGTTATACAGTTTGGCCCGGCATTTTATCGGGCGCCGGAACCTCCCCGCTCTCCACCACCGGCTTCGCCCTGCAGTCCGGCGAGTCCAACGTCGTCGCCGTGCCGGCCGCCTGGTCCGGCCGCCTCTGGGGGCGGACACTCTGCTCCCAGGACGCCCCCACGGGGAAGTTCTCCTGCGTCACCGGCGACTGCAGCTCCTCCACCGTGGAATGCGCCGGCGGCGCCGCCCCGCCAGCCACACTCGCGGAGTTCACCCTGAACGGCGCCGGCGGGCTGGATTTCTTCGACGTCAGCCTCGTCGACGGTTACAACCTCCCCGTGATTATAGAGCCTCAGGGCGGAACCGGTGCCGGAAACTGCACTGCGACGGGGTGCGTGGTGGACTTGAACACGCCGTGCCCGACGGAGCTCAAGGTGATGAGTAGCGGAGAGGGCGTGGCGTGCAAAAGCGCGTGCGAAGCATTCGAGGATCCGCAGTATTGCTGCAGTGGCGCTTACGCGACGCCTGACACATGCAAACCCAGTTCCTACTCGCAGTTCTTCAAGAGCGCGTGCCCACGTGCTTACAGCTACGCTTATGACGATGGCTCCAGCACCTTCACTTGTGCCTCTGCTGATTATATCATCACGTTCTGCCCCTCACCCTCCACAAgTTCGATTAAGTCGGGGAATGGGAAATACCCAATGGCGGTGGACACTTCGGGAAGTAATGTGGACGGGAGAGCAAACAATGTTATGACGGTGGCTGTTTTGGTGGCGTTAATTGCAATTCAATTTGGTTCCGCTTCACCGCCAATGTTATATTAA 909 0.5831 MTASTRFSTTLVTLCFFQFLAGSYSTTFTIVNKCSYTVWPGILSGAGTSPLSTTGFALQSGESNVVAVPAAWSGRLWGRTLCSQDAPTGKFSCVTGDCSSSTVECAGGAAPPATLAEFTLNGAGGLDFFDVSLVDGYNLPVIIEPQGGTGAGNCTATGCVVDLNTPCPTELKVMSSGEGVACKSACEAFEDPQYCCSGAYATPDTCKPSSYSQFFKSACPRAYSYAYDDGSSTFTCASADYIITFCPSPSTSSIKSGNGKYPMAVDTSGSNVDGRANNVMTVAVLVALIAIQFGSASPPMLY 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2250 302 SUPERFAMILY Osmotin, thaumatin-like protein 26 248 IPR037176 -
Ssu2g2250 302 CDD TLP-PA 27 246 - -
Ssu2g2250 302 SMART tha2 28 247 IPR001938 -
Ssu2g2250 302 PANTHER PATHOGENESIS-RELATED THAUMATIN SUPERFAMILY PROTEIN 14 267 - -
Ssu2g2250 302 Gene3D Thaumatin 26 247 IPR037176 -
Ssu2g2250 302 PANTHER OS03G0233200 PROTEIN 14 267 IPR001938 -
Ssu2g2250 302 PIRSF PR5 1 293 IPR001938 -
Ssu2g2250 302 Pfam Thaumatin family 32 247 IPR001938 -
Ssu2g2250 302 PRINTS Pathogenesis-related protein signature 127 143 IPR001938 -
Ssu2g2250 302 PRINTS Pathogenesis-related protein signature 237 246 IPR001938 -
Ssu2g2250 302 PRINTS Pathogenesis-related protein signature 27 39 IPR001938 -
Ssu2g2250 302 PRINTS Pathogenesis-related protein signature 75 86 IPR001938 -
Ssu2g2250 302 ProSiteProfiles Thaumatin family profile. 25 247 IPR001938 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2250 Ssu-Chr2 79064223 79065891 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2250 7 252 Receptor kinase-like Gene Family AT5G38280 51.190 9.72e-83 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2250 - - gmx:100807106 540.421
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu5g0055 5 1017690 1019325 Ssu2g2250 2 79064223 79065891 ECH
Ssu2g2250 2 79064223 79065891 Ssu2g2250 2 79064223 79065891 ECH