Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2242 ATGGCAGAAAACAAAGACGAAATCTATTCTGAAAGTTCTGTATGTTCACCAAGCTCAACCTCGCCAATGGGTAGCAAGTATAGATACTTGTTTGATAGATTATGCGGTTGTGCCGCTTCATGGAACAAAACCAGCACACCAAGAGGTCGAAGACTTTTCCACAGAGAtgtggaaaaagaagaagaattccaGTATGCCAGTAGTCACTGTCTCTCATCCTACTATAGTGTTTTTGTGGTTCGACTAGCAATCATGGTCATGCTGGCCATCTTGATAGGGCTTCTCACTATACTGACATGGCATTTCACGAAGATTTATACAACAAAATCACTTAATAGTTTGGCATATGGTCTGCGTTATGAACTTCTGCAACGCCCCGTCTTGAGGATGTGGAATATTTTAAACTCAACATCTGAAATTACCACTGCTCAGGTCAAACTGTCTCAGTATTTGATCAGACGTTACAGCAACCCTGCCACTCAAGCAGAGCAAGTTGAGCTGTATGAAGCGATGAGGGCTGTAACATGGGCGTTATTTGCTAGTCGGAAAGCTCTCAACTCTATAACTATCAACTATAAGAACGGATTTGTTCAGGCATTCCATAGGGATCTGAAGGACAACAACACATTTTACATCTACTCTGATATTGCAAATTACTCGATGGGTGTCAGCAACTCAAACAAGATCAATTCCATTTCAACGCATCAAGGTTGGGATGATAAGGCCCTTGGTGGTAACTATTCTGCAATCTGGTACCGTGAACCACTCGACCCTGTGAGTGGTGAAAAGATTGGAAAAGCTATGCAAATTGCACCCGAAGACTTGATCAACATAGCTGGCCTTTCCCAAGTACCTGATGGCGTAGCTTCGTGGCACGTCGCAGTGAGCAAGTTCACAGATTCACCATTGCTTTCGGCAGCATTGCCAGTTTGGGACTCTTCTAATAAGACTATTATGGCAGTTGTGGGGGTCACAACTGCACTTTATAGTGTAGGACAGCTAATGAGAGAGCTAGTCGAGTTGCACAGTGGCCATATGTATTTGACTTCCCAAGAGGGTTATTTACTTGCAACTTCCACAAGTGCACCTCTACTGGCAAATTCAACAAAGCCTCCTAAGCTTAAGATGGCTGTTGACTGCGAAGACGATGTAATACGACAGGGAGCTGAGTGGTTACAGAGAACTTATGGGAACAATTTTCCTCCCAGTCATGAGGTTCATGTAGAGAATGTCAAGCTAGGCAACCAGCGATATTACATTGACTCGTTCTTCCTAAATTTGAAGAGACTTCCTTTGGTCGGTGTGATCATCATACCAAGAAAGTATATCATGGGGCAGGTGGATGAAAGAGCCTTCAAAACGTTGGTTATTCTGATATCTGCATCATTATGTATTTTAGTCATAGGATGTGTTTGCATTTTGATATTGACAAGCGGAGTATCAAAGGAAATGAATCTAAGAGCAGAACTGATAAATCAACTGGAAGCAAGAAGAAAAGCAGAGGCATCAAGCAACTATAAAAGTCAATTCCTTGCAAACATGAGTCATGAACTGAGGACACCTATGGCAGCAGTAATTGGGTTGCTTGACATTCTCATATCCGATGACTGTCTCACAAATGAACAATATTCAACAGTTACTCAAATAAGAAAATGCTCAACTGCTCTGCTTCGTCTTCTTAATAATATCTTGGATCTGAGTAAGGTGGAATCTGGAAAACTGATCCTAGAAGATGCAGAATTTGACTTGGGAAGGGAACTTGAAGGGCTTGTAGATATGTTTTCTGTTCAGTGCATTGACCACAACGTGGAGACTGTTTTAGACCTGTCTGATGATATGCCAAAGGTGGTTCGGGGTGATTCTGCGAGGGTAGTTCAAATATTTGCAAATCTGATCAACAATTCAATTAAGTTTACTCCATCGGGTCATATTATTCTGCGAGGATGGTGTGAAAACCCAAATTCTTCCGTTGATAGTCCAAATTTTCCTCTTGACCAGAAGAAATCACGGAGTTTACAGAAGTTCAGAGAGAAGCCAAATGCAAACCACGCAAAGAAAACATCTATAAAAGATAACAAAGTGATACTTTGGTTTGAAGTTGATGACACAGGCTGTGGTATTGACCCTAGCAAATGGGATTCTGTGTTTGAAAGCTTTGAGCAAGCTGATCCATCAACTACTCGACTGCATGGAGGCACCGGTCTTGGTCTTTGCATTGTGAGAAACTTGGTTAACAAGATGGGTGGAGACATCAAGGTTGTCAAAAAGGAGGGCCCTGGAACACTGATGCGATTTTGCTTGCTTCTCAGTTCGCCCATGGATGTCACAGAACAACATTGTGCAGTAGATTTGACAGACAATGACTTAGTGGTACTGCTTGCCCTGCATGGCAACATGGGTCGATTAATTACATACAAGTGGCTACAGAAAAACGGGGTGTGCACAATGGAAGCATCTGAATGGAACGGATTAACTCAAATTTTGAGGGAACTCTTTCATGCAAGAAGTTCAGTCCATAATAATGACTTTGATGCACACTATCCAGCAAAAGAGGCATTGAAGTCTAAACTACTCAACATACGAGATATGAGGAACCCGgtttttgtcattgttgttgaCGTTGGACTACTTGACTTGAGCACAGATATATGGAAGGAACAGCTTAACTTCCTTCACAGGTACTTTGGTAGAGCAAAGTTCGTATGGATGCTAAATCATGACACCTCCAATAATGTAAAGATGGAGCTCCGAAGGAAAGGGCATATACTGATGGTCAACAAACCCCTCTACAAAGcaaaaatgattcatattttggAAGCTGTCATAAAGGAGAGAAATCTTGAGCTACTAAAGAAAAACATGACAGCTTCAAGGACCACAATGAAAGAGGGTGATTTGCACGAGTTTCTTGAGATTGATTCCACTCATTTTGATGCTGCTAGCTCTGATGATTCTGACATATCTGAAATAGGTGGTTCTAATCCTGTTAGTGCTAATGGAGATAAACCAATTGAAAAGGTAGCCAAATCCCATCCATCATCACCATACCACATGAATAACTGCCTAGTTAGATTaaccaatgaaaatgaatatctGGGAGAACATAATTTGAGGAAAGAAGAATCTTCTAGTCCCAGCTCCAATTATGCCACTGAAGACAACCAACCTAAATCCACCAAAGAATCATCCATTTCAACAGAAGATCAGGATGAAGATTCTGAATGTGGGGAAACACATAGGGTCATCAGCTCAAGTAAAGCAGTAGATGGAAAGAAATCTCTTGAGGGCCTAAAGATTTTGCTTGCAGAAGATACACCAGTACTTCAAAAGGTTGCAACCATAATGCTTGAAAAAATGGGAGCAGCTGTTGTTGCTGTAGGTGATGGACAACAGGCAGTGGATGCTCTCAATTGCATGTTCACTGCTGAAGATTGTAGAAGGGAATCACTCCAGAAGGAAAGAAACACAAGATCTCAAACAGAGATTTTGACTTGCCGTCCATATGACTTGATCCTAATGGATTGTCAGATGCCAAAGATGGATGGCTACGAGGCAACAAAAGCAATCAGGAAATCAGAAGTGGGAACAGGCTTGCACATTCCCATTGTTGCTCTTACAGCACATGCAATGTCATGTGATGAAGCCAAATGCCTGGAGGTGGGCATGGATGCTTACTTAACAAAGCCAATTGACTTCAAAATGATGGTGTCCACCATTCTTTCACTCACTAAAAGAACATCTTTTCTCTCATAA 3753 0.4095 MAENKDEIYSESSVCSPSSTSPMGSKYRYLFDRLCGCAASWNKTSTPRGRRLFHRDVEKEEEFQYASSHCLSSYYSVFVVRLAIMVMLAILIGLLTILTWHFTKIYTTKSLNSLAYGLRYELLQRPVLRMWNILNSTSEITTAQVKLSQYLIRRYSNPATQAEQVELYEAMRAVTWALFASRKALNSITINYKNGFVQAFHRDLKDNNTFYIYSDIANYSMGVSNSNKINSISTHQGWDDKALGGNYSAIWYREPLDPVSGEKIGKAMQIAPEDLINIAGLSQVPDGVASWHVAVSKFTDSPLLSAALPVWDSSNKTIMAVVGVTTALYSVGQLMRELVELHSGHMYLTSQEGYLLATSTSAPLLANSTKPPKLKMAVDCEDDVIRQGAEWLQRTYGNNFPPSHEVHVENVKLGNQRYYIDSFFLNLKRLPLVGVIIIPRKYIMGQVDERAFKTLVILISASLCILVIGCVCILILTSGVSKEMNLRAELINQLEARRKAEASSNYKSQFLANMSHELRTPMAAVIGLLDILISDDCLTNEQYSTVTQIRKCSTALLRLLNNILDLSKVESGKLILEDAEFDLGRELEGLVDMFSVQCIDHNVETVLDLSDDMPKVVRGDSARVVQIFANLINNSIKFTPSGHIILRGWCENPNSSVDSPNFPLDQKKSRSLQKFREKPNANHAKKTSIKDNKVILWFEVDDTGCGIDPSKWDSVFESFEQADPSTTRLHGGTGLGLCIVRNLVNKMGGDIKVVKKEGPGTLMRFCLLLSSPMDVTEQHCAVDLTDNDLVVLLALHGNMGRLITYKWLQKNGVCTMEASEWNGLTQILRELFHARSSVHNNDFDAHYPAKEALKSKLLNIRDMRNPVFVIVVDVGLLDLSTDIWKEQLNFLHRYFGRAKFVWMLNHDTSNNVKMELRRKGHILMVNKPLYKAKMIHILEAVIKERNLELLKKNMTASRTTMKEGDLHEFLEIDSTHFDAASSDDSDISEIGGSNPVSANGDKPIEKVAKSHPSSPYHMNNCLVRLTNENEYLGEHNLRKEESSSPSSNYATEDNQPKSTKESSISTEDQDEDSECGETHRVISSSKAVDGKKSLEGLKILLAEDTPVLQKVATIMLEKMGAAVVAVGDGQQAVDALNCMFTAEDCRRESLQKERNTRSQTEILTCRPYDLILMDCQMPKMDGYEATKAIRKSEVGTGLHIPIVALTAHAMSCDEAKCLEVGMDAYLTKPIDFKMMVSTILSLTKRTSFLS 1250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2242 1250 ProSiteProfiles Histidine kinase domain profile. 513 771 IPR005467 -
Ssu2g2242 1250 SMART HKATPase_4 619 771 IPR003594 -
Ssu2g2242 1250 CDD REC_hyHK_CKI1_RcsC-like 1099 1239 - -
Ssu2g2242 1250 Gene3D - 574 772 IPR036890 -
Ssu2g2242 1250 PANTHER OSMOSENSOR HISTIDINE KINASE 23 1244 - -
Ssu2g2242 1250 MobiDBLite consensus disorder prediction 980 1019 - -
Ssu2g2242 1250 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 619 769 IPR003594 -
Ssu2g2242 1250 ProSiteProfiles Response regulatory domain profile. 1098 1243 IPR001789 GO:0000160
Ssu2g2242 1250 SUPERFAMILY Homodimeric domain of signal transducing histidine kinase 494 573 IPR036097 GO:0000155|GO:0007165
Ssu2g2242 1250 PRINTS Bacterial sensor protein C-terminal signature 696 710 IPR004358 GO:0016310|GO:0016772
Ssu2g2242 1250 PRINTS Bacterial sensor protein C-terminal signature 731 749 IPR004358 GO:0016310|GO:0016772
Ssu2g2242 1250 PRINTS Bacterial sensor protein C-terminal signature 714 724 IPR004358 GO:0016310|GO:0016772
Ssu2g2242 1250 SMART HisKA_10 506 572 IPR003661 GO:0000155|GO:0007165
Ssu2g2242 1250 MobiDBLite consensus disorder prediction 1 20 - -
Ssu2g2242 1250 SUPERFAMILY CheY-like 1095 1245 IPR011006 -
Ssu2g2242 1250 SUPERFAMILY ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase 561 767 IPR036890 -
Ssu2g2242 1250 PANTHER TWO-COMPONENT HISTIDINE KINASE 23 1244 - -
Ssu2g2242 1250 Gene3D - 494 573 - -
Ssu2g2242 1250 CDD HisKA 507 568 IPR003661 GO:0000155|GO:0007165
Ssu2g2242 1250 SMART REC_2 1097 1239 IPR001789 GO:0000160
Ssu2g2242 1250 MobiDBLite consensus disorder prediction 1042 1062 - -
Ssu2g2242 1250 MobiDBLite consensus disorder prediction 1037 1086 - -
Ssu2g2242 1250 Gene3D - 1077 1246 - -
Ssu2g2242 1250 Pfam Response regulator receiver domain 1099 1238 IPR001789 GO:0000160
Ssu2g2242 1250 Pfam His Kinase A (phospho-acceptor) domain 507 572 IPR003661 GO:0000155|GO:0007165
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2242 Ssu-Chr2 78938942 78946261 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2242 21 1248 Histidine Kinase Gene Family AT2G17820 64.228 0.0 1588
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Ssu2g2242 HATPase_c 6.6e-23 CL0025
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2242 - - gmx:100814068 2230.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2242 2 78938942 78946261 Ssu2g2242 2 78938942 78946261 ECH