Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2223 ATGACTCTCAAAGGCTTGGTATCACTTGTCATCAATTTAATTGGTCTAGCAGAGGGACGAAGGAACAATGATGCCCCTTTACCTTACATGATATCCGGCCATATTGTACCACATAGTAACAATCAGCAATCATCTGAATCTGCAGCAGCATCCAATTTTAATGAGGATTGTTGGTGTTGTGTGTGCTTGTCGAGGCTGAAAGCCGAAGATGAAATCCGTGTCCTTCCTTGCTCGCACAAATTCCATAAGATTTGTGTAAATAGATGGCTTAAGGGTCGCCACAAAACATGTCCACTCTGCCGTTTCTCAATGGGAGCCGAGGAGAAGTCTCATCGTGCCGAAATGTTCACTGAAGAGATGTTAATATGGTTTTCTTCTTTCCATGTAGCTGGTATGTAA 399 0.4286 MTLKGLVSLVINLIGLAEGRRNNDAPLPYMISGHIVPHSNNQQSSESAAASNFNEDCWCCVCLSRLKAEDEIRVLPCSHKFHKICVNRWLKGRHKTCPLCRFSMGAEEKSHRAEMFTEEMLIWFSSFHVAGM 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2223 132 Pfam Ring finger domain 59 101 IPR001841 -
Ssu2g2223 132 ProSiteProfiles Zinc finger RING-type profile. 59 101 IPR001841 -
Ssu2g2223 132 SMART ring_2 59 100 IPR001841 -
Ssu2g2223 132 PANTHER TARGET OF ERK KINASE MPK-1 7 117 - -
Ssu2g2223 132 SUPERFAMILY RING/U-box 53 105 - -
Ssu2g2223 132 CDD mRING-H2-C3H2C2D_ZSWM2 59 101 - -
Ssu2g2223 132 PANTHER GB|AAF27103.1 7 117 - -
Ssu2g2223 132 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 107 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2223 Ssu-Chr2 78647789 78648187 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2223 55 105 C3H Transcription Factor Family AT1G80400 50.980 3.42e-13 63.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2223 - - gmx:100809233 237.654