Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2222 ATGGGTGGGTTGCAGATTTATGGTTACAGAATGTCACTATGGGGAGAGCATCTTGGCATGTTAGATCAAACTATTGAGGAACCAGAGAGATTGACGTGTGTGCATAAAGTGAATGCAATTGCAGACAATAATTGGAGAATTTTCGCCTCTGAAGATCTCTCATTTCTGCTGGGAGAAATTCAGAATGAATTGCTGAAGATGATGTTTTCTTAA 213 0.3944 MGGLQIYGYRMSLWGEHLGMLDQTIEEPERLTCVHKVNAIADNNWRIFASEDLSFLLGEIQNELLKMMFS 70
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2222 70 Pfam Phospholipase D C terminal 22 56 IPR024632 -
Ssu2g2222 70 PANTHER PHOSPHOLIPASE D 5 60 IPR015679 -
Ssu2g2222 70 PANTHER PHOSPHOLIPASE D 5 60 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2222 Ssu-Chr2 78645012 78647346 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2222 5 66 Phospholipase D Gene Family (Wang group) AT4G11850 50.000 1.23e-17 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2222 K01115 - gmx:100801787 102.449