Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2213 ATGGACTTTGTACCAAATCCGTGTCCTTTGCGTTCATCTTCGTTCGTGAATCTCGTCGAGAGGTTTAAACAACTTGGTACCCTCGCCGTCTCTGCTGTTATCGGGAACATCTTCTCCGCGATCTTGACCTTCTGCTTCGCATTAGTGGGCACTTTGTTGGGGGCTTTGACTGGAGCTTTGATAGGACAAGAAACTGAGAGTGGCTTCATTCGAGGGGCTGCTGTTGGTGCCATATCAGGAGCTGTTTTTTCCATTGAAGTGTTTGAATCCTCTCTTGTTCTTTGGCAATCTGACGAATCTGGGATTGGCTGTGTCTTATACTTGATTGATGTTATTGCCAGCTTACTGAGTGGGAGACTTGTGCGTGAGAGGATAGGTCCAGCCATGTTGAGTGCTGTCCAAAGTCAGATGGGTGCTGTTGAAACCAGCTTTGATGAGGTTCAAAACATCTTTGACACCGGTGGTGCCAAAGGTTTGTCTGGAGATTTGGTTGAAAAAATCCcgaaaatcaaaatcacaacTGACAACAACGTTGATGCATCCGGTGATAGAGTTTCTTGTTCAGTTTGCCTGCAGGACTGTCAGCTTGGAGAGACAGTAAGAAGCTTACCTCACTGCCATCACATGTTTCACCTACCTTGCATAGATAAGTGGCTCTTCAGGCATGGTTCTTGCCCGTTGTGCAGAAGGGATCTGTAA 699 0.4564 MDFVPNPCPLRSSSFVNLVERFKQLGTLAVSAVIGNIFSAILTFCFALVGTLLGALTGALIGQETESGFIRGAAVGAISGAVFSIEVFESSLVLWQSDESGIGCVLYLIDVIASLLSGRLVRERIGPAMLSAVQSQMGAVETSFDEVQNIFDTGGAKGLSGDLVEKIPKIKITTDNNVDASGDRVSCSVCLQDCQLGETVRSLPHCHHMFHLPCIDKWLFRHGSCPLCRRDL 232
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2213 232 PANTHER NEP1-INTERACTING PROTEIN-LIKE 1 11 232 - -
Ssu2g2213 232 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 148 232 IPR013083 -
Ssu2g2213 232 SUPERFAMILY RING/U-box 176 232 - -
Ssu2g2213 232 Pfam Ring finger domain 186 229 IPR001841 -
Ssu2g2213 232 CDD RING-H2_PA-TM-RING 187 229 - -
Ssu2g2213 232 SMART ring_2 187 228 IPR001841 -
Ssu2g2213 232 Pfam YMGG-like Gly-zipper 46 81 IPR027367 -
Ssu2g2213 232 PANTHER NEP1-INTERACTING PROTEIN-LIKE 2 11 232 IPR044523 -
Ssu2g2213 232 ProSiteProfiles Zinc finger RING-type profile. 187 229 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2213 Ssu-Chr2 78461800 78463519 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2213 12 232 C3H Transcription Factor Family AT5G66070 76.018 6.34e-118 333
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2213 - - gmx:100807641 439.113