Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2204 ATGGCGGACACCGGCGGCGACGACAATGGCGTTTTCTACCTCCACGGCGACCTCGACTTGAAAATCATCGAGGCTCGCCACTTGCCGAACATGGACATCTTCTCGGAGCGTCTCCGCCGCTGCGTAACCGCCTGCGACACCATCAAATTCTCCTCCGACGCCGCCGAAGACGGCAGCAGCCACCGAACGCGAACGCACCGCCACCGGAAGATCATCACGAGCGACCCGTACGTCACCGTCTCGGTGCCGCAAGCCACGGTGGCGCGCACGCGCGTGCTGAAAAACTCTCCGGACCCTGTCTGGAAGGAGCGCTTCAACATCCCGCTCGCGCACCCCGTGGTGGATTTGGAATTCCGCGTCAAAGACGACGACGTTTTCGGCGCGCAGACCATGGGGACCGTCAAGATTCCGGCGCGGGAGATTGCCGCCGGCAGGCAGATTTCCGGCTGGTTCCCGATCGTCGGTCCCTCGGGGAAGCCGCCGAAGCCGGACACCGCGCTTCACATCGACATGACGTTCACGCCGGTGGGGGAGAATTCGCTCTACCGGCGAGGCGTTGCGGCGGATCCGGAGCACCGCGGCGTGCGGCACACGTATTTTCCGGTGAGGAAGGGGAGTTCGGTGAGGCTGTACCAGGACGCGCACTGTCCCGAATCTGGCGAAGGGAAGTTACCGGAGATTAAGCTTGAGAATGGAATGGTTTATAGGCATGGGAAGTGTTGGGAGGACATTTGTCACGCTATATCTGAGGCTCATCACATGGTGTATTTGGTGGGTTGGTCGATTTACCATAAGGTGAAGCTTGTTAGAGAGCCAACGAGGCTGTTCCCAAGAGGTGGGGATTTGACGCTTGGTGAGTTGCTGAAGTATAAGTCTGAAGAAGGGGTGAGGGTGCTGTTGCTGGTTTGGGATGATAAGACTTCGCATGATAAGCTTTTCTTGAAGACGACTGGGGTGATGCAGACTCATGATGAGGAAACGAGGAAGTTCTTTAAACATTCTTCTGTTATGTGTGTTCTTGCGCCTCGGTATGCTAGCAGCAAGATGAGCTTCTTGAAGCAACAGGTTGTTGGAACGGTCTTCACACACCACCAAAAATGTGTGATTGTGGACACACAGGCTGCTGGTAATAACAGGAAGATAACTGCTTTTATAGGAGGTCTTGATCTATGTGATGGTCGCTATGACACACCCGAGCATCGTCTGTTTCGTGATCTTGACACTGTATTTTCTGGTGATTTCCACAATCCTACATTTCCTGCTGGAACAAGGGTTCCTAGACAACCATGGCATGATATGCACTGCAGAATAGATGGACCTGCTGCAtatgatgttcttattaattttgagCAGCGATGGAGAAAAGCAACTAAGTGGAAAGAGTTTGCAATCCTTTTCAAAAAATCCTCTCAATGGCATGATGATGCTTTAATAAGAATAGAACGCATCTCATGGATATTAAGTCCTTCTGTTTCTACAGCAAGGGATGATTATACAATTATTCCAGAGGATGACCCTTTGTTATGGGTTTCTAGTGAAGATGATCCTGAAAGCTGGCATGTTCAGATCTTCCGCTCCATTGACTCAGGATCCCTGAAAGGATTTCCCAAACGTGTTGATGTTGCTCTGTCCCAGAATCTTATCTGTGCTAAAAATCTGGTTATAGACAAAAGCATTCAAACAGCATACATTCAAGCGATCAGATCTGCTCAacactttatttatattgaaaaccAATACTTCATTGGATCATCGTATGCATGGCCATCTTATAAAGATGCAGGGGCTGATAATCTCATTCCAATGGAATTGGCACTGAAAATTGCTAGTAAAATCAGAGCTAAGGAGAGATTTGCTGTCTATATTGTTTTACCAATGTGGCCAGAAGGTGATCCTAAAACTGGGGCTATGCAAGAAATCCTCTTTTGGCAGGGCCAGACGATGCAAATGATGTATGATGTTGTTGCTAGAGAATTGAAATCAATGCAACTTACTGATGTGCACCCACAAGATTACCTCAATTTTTATTGCCTTGGAAATCGGGAACACTTTAATGAAGAAAGTTCAAGCACGAATGGTGCACAGGTCTCCGGAGCGTATAAATATCGCCGATTTATGATTTATGTGCATGCTAAGGGGATGATCATTGATGATGAGTATGTTATAATTGGATCTGCTAATATAAACCAAAGATCTATGGCTGGTACTAAAGATACTGAGATAGCTATGGGTGCATATCAGCCCCATTACACATGGTCAGCAAAGAAAAGACATCCATATGGCCAGATTTATGGTTACAGAATGTCACTTTGGGGAGAGCATCTTGGCATGCTAGATGAAACTTTTGAGGAACCAGAGAGATTGGAGTGTGTGCGTAAAGTGAATGCAATTGCAGACAATAATTGGAAATTATTCGCTTCTGAAGATTTCTCACTTCTGCAGGGACATCTTCTTAAGTATCCTGTACAGGTAGATTCCGATGGGAAGATCAGATCCCTACCTGAATGTGAGAATTTCCCTGATGCTGGCGGTAAAATATTGGGGGCGTGCTCCACAACAATTCCAGATATCCTAACAACTTAA 2583 0.4715 MADTGGDDNGVFYLHGDLDLKIIEARHLPNMDIFSERLRRCVTACDTIKFSSDAAEDGSSHRTRTHRHRKIITSDPYVTVSVPQATVARTRVLKNSPDPVWKERFNIPLAHPVVDLEFRVKDDDVFGAQTMGTVKIPAREIAAGRQISGWFPIVGPSGKPPKPDTALHIDMTFTPVGENSLYRRGVAADPEHRGVRHTYFPVRKGSSVRLYQDAHCPESGEGKLPEIKLENGMVYRHGKCWEDICHAISEAHHMVYLVGWSIYHKVKLVREPTRLFPRGGDLTLGELLKYKSEEGVRVLLLVWDDKTSHDKLFLKTTGVMQTHDEETRKFFKHSSVMCVLAPRYASSKMSFLKQQVVGTVFTHHQKCVIVDTQAAGNNRKITAFIGGLDLCDGRYDTPEHRLFRDLDTVFSGDFHNPTFPAGTRVPRQPWHDMHCRIDGPAAYDVLINFEQRWRKATKWKEFAILFKKSSQWHDDALIRIERISWILSPSVSTARDDYTIIPEDDPLLWVSSEDDPESWHVQIFRSIDSGSLKGFPKRVDVALSQNLICAKNLVIDKSIQTAYIQAIRSAQHFIYIENQYFIGSSYAWPSYKDAGADNLIPMELALKIASKIRAKERFAVYIVLPMWPEGDPKTGAMQEILFWQGQTMQMMYDVVARELKSMQLTDVHPQDYLNFYCLGNREHFNEESSSTNGAQVSGAYKYRRFMIYVHAKGMIIDDEYVIIGSANINQRSMAGTKDTEIAMGAYQPHYTWSAKKRHPYGQIYGYRMSLWGEHLGMLDETFEEPERLECVRKVNAIADNNWKLFASEDFSLLQGHLLKYPVQVDSDGKIRSLPECENFPDAGGKILGACSTTIPDILTT 860
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2204 860 Pfam C2 domain 16 153 IPR000008 -
Ssu2g2204 860 ProSiteProfiles C2 domain profile. 1 151 IPR000008 -
Ssu2g2204 860 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 359 394 IPR001736 GO:0003824
Ssu2g2204 860 CDD C2_plant_PLD 10 174 - -
Ssu2g2204 860 Pfam Phospholipase D Active site motif 359 394 IPR001736 GO:0003824
Ssu2g2204 860 Gene3D C2 domain 15 182 IPR035892 -
Ssu2g2204 860 Pfam PLD-like domain 564 742 IPR025202 -
Ssu2g2204 860 SUPERFAMILY Phospholipase D/nuclease 198 467 - -
Ssu2g2204 860 SMART pld_4 359 394 IPR001736 GO:0003824
Ssu2g2204 860 SMART pld_4 705 732 IPR001736 GO:0003824
Ssu2g2204 860 Gene3D Endonuclease Chain A 229 478 - -
Ssu2g2204 860 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 705 732 IPR001736 GO:0003824
Ssu2g2204 860 PIRSF PLD_plant 5 860 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Ssu2g2204 860 PANTHER PHOSPHOLIPASE D DELTA 10 860 - -
Ssu2g2204 860 Gene3D Endonuclease Chain A 528 755 - -
Ssu2g2204 860 Pfam Phospholipase D C terminal 779 849 IPR024632 -
Ssu2g2204 860 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 14 176 IPR035892 -
Ssu2g2204 860 SMART C2_3c 17 150 IPR000008 -
Ssu2g2204 860 SUPERFAMILY Phospholipase D/nuclease 556 788 - -
Ssu2g2204 860 PANTHER PHOSPHOLIPASE D 10 860 IPR015679 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2204 Ssu-Chr2 78303148 78316380 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2204 1 696 Phospholipase D Gene Family (Wang group) AT4G35790 71.897 0.0 1059
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2204 K01115 - gmx:100801787 1630.15