Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Ssu2g2203 | ATGGCCGATTCTCCACCGAGAAGGAATTCAAGGTCCCCTTCCCCATGGAGGGCTCAGTCAAGGTCCAGGTCAAGATCTAGATCTAGGCCTAGGTCTAGGTCCCGGTCAAGATCTTTTGAAAAGCAAAGGCCAAGATCCGGTTCAAGAAGTCGTGGCAGATCAAGATCAAGAAGTAATGAAAGGTTTGAGTCTAGAAATGGTGGGAATACACTTTATGTGACTGGCCTATCTTCAAGGGTCACTGAGAGAGACCTAGAGGAGCATTTCTCTAAGGAGGGAAAGGTTGCTTCGTGTTTTCTTGTGGTGGAGCCTCGGACGCGAATTTCTCGCGGTTTTGCTTTTATTACAATGGATACTGTTGAGGATGCGAACCGCTGCATCAAATATCTCAATCAATCAGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCACGAAGAAAGCGGCCAAGAACTCCTACCCCTGGACACTATCTTGGCCTGAAAAGTACTAGAGACTATGGATATCGCGGTGACCGTGGAAGGTACCGAGGAGGTGGATCTAGTCGTGATGATTATGCATATCGTAGGTCTCCTAGGCGCTCACCATATCGAGGTGGTAGAGATTATTCACCAAGGCACTCACCACCTTATGGTGGAAGATCTAGGAGGGATAGGTCCAGGTCACTTCCTTATTCTCCATATGGTAGTCCAGATAGGAGGTATGCTCGTGGATCTAGGTGA | 723 | 0.4799 | MADSPPRRNSRSPSPWRAQSRSRSRSRSRPRSRSRSRSFEKQRPRSGSRSRGRSRSRSNERFESRNGGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDTVEDANRCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSTRDYGYRGDRGRYRGGGSSRDDYAYRRSPRRSPYRGGRDYSPRHSPPYGGRSRRDRSRSLPYSPYGSPDRRYARGSR | 240 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Ssu2g2203 | 240 | ProSiteProfiles | Eukaryotic RNA Recognition Motif (RRM) profile. | 69 | 147 | IPR000504 | GO:0003723 | |
Ssu2g2203 | 240 | Pfam | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 71 | 140 | IPR000504 | GO:0003723 | |
Ssu2g2203 | 240 | SUPERFAMILY | RNA-binding domain, RBD | 67 | 179 | IPR035979 | GO:0003676 | |
Ssu2g2203 | 240 | MobiDBLite | consensus disorder prediction | 33 | 62 | - | - | |
Ssu2g2203 | 240 | PANTHER | RNA RECOGNITION MOTIF | 2 | 236 | - | - | |
Ssu2g2203 | 240 | MobiDBLite | consensus disorder prediction | 166 | 201 | - | - | |
Ssu2g2203 | 240 | CDD | RRM_RBMX_like | 68 | 147 | - | - | |
Ssu2g2203 | 240 | SMART | rrm1_1 | 70 | 143 | IPR000504 | GO:0003723 | |
Ssu2g2203 | 240 | MobiDBLite | consensus disorder prediction | 144 | 240 | - | - | |
Ssu2g2203 | 240 | MobiDBLite | consensus disorder prediction | 1 | 21 | - | - | |
Ssu2g2203 | 240 | Gene3D | - | 7 | 154 | IPR012677 | - | |
Ssu2g2203 | 240 | PANTHER | TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED | 2 | 236 | - | - | |
Ssu2g2203 | 240 | MobiDBLite | consensus disorder prediction | 1 | 71 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Ssu2g2203 | Ssu-Chr2 | 78282768 | 78285340 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Ssu2g2203 | 65 | 154 | Eukaryotic Initiation Factors Gene Family | AT1G49760 | 28.889 | 7.76e-07 | 47.8 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Ssu2g2203 | K12897 | - | gmx:100527350 | 296.204 |