Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2203 ATGGCCGATTCTCCACCGAGAAGGAATTCAAGGTCCCCTTCCCCATGGAGGGCTCAGTCAAGGTCCAGGTCAAGATCTAGATCTAGGCCTAGGTCTAGGTCCCGGTCAAGATCTTTTGAAAAGCAAAGGCCAAGATCCGGTTCAAGAAGTCGTGGCAGATCAAGATCAAGAAGTAATGAAAGGTTTGAGTCTAGAAATGGTGGGAATACACTTTATGTGACTGGCCTATCTTCAAGGGTCACTGAGAGAGACCTAGAGGAGCATTTCTCTAAGGAGGGAAAGGTTGCTTCGTGTTTTCTTGTGGTGGAGCCTCGGACGCGAATTTCTCGCGGTTTTGCTTTTATTACAATGGATACTGTTGAGGATGCGAACCGCTGCATCAAATATCTCAATCAATCAGTTTTAGAGGGTCGCTATATCACTGTTGAGCGGTCACGAAGAAAGCGGCCAAGAACTCCTACCCCTGGACACTATCTTGGCCTGAAAAGTACTAGAGACTATGGATATCGCGGTGACCGTGGAAGGTACCGAGGAGGTGGATCTAGTCGTGATGATTATGCATATCGTAGGTCTCCTAGGCGCTCACCATATCGAGGTGGTAGAGATTATTCACCAAGGCACTCACCACCTTATGGTGGAAGATCTAGGAGGGATAGGTCCAGGTCACTTCCTTATTCTCCATATGGTAGTCCAGATAGGAGGTATGCTCGTGGATCTAGGTGA 723 0.4799 MADSPPRRNSRSPSPWRAQSRSRSRSRSRPRSRSRSRSFEKQRPRSGSRSRGRSRSRSNERFESRNGGNTLYVTGLSSRVTERDLEEHFSKEGKVASCFLVVEPRTRISRGFAFITMDTVEDANRCIKYLNQSVLEGRYITVERSRRKRPRTPTPGHYLGLKSTRDYGYRGDRGRYRGGGSSRDDYAYRRSPRRSPYRGGRDYSPRHSPPYGGRSRRDRSRSLPYSPYGSPDRRYARGSR 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2203 240 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 69 147 IPR000504 GO:0003723
Ssu2g2203 240 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 71 140 IPR000504 GO:0003723
Ssu2g2203 240 SUPERFAMILY RNA-binding domain, RBD 67 179 IPR035979 GO:0003676
Ssu2g2203 240 MobiDBLite consensus disorder prediction 33 62 - -
Ssu2g2203 240 PANTHER RNA RECOGNITION MOTIF 2 236 - -
Ssu2g2203 240 MobiDBLite consensus disorder prediction 166 201 - -
Ssu2g2203 240 CDD RRM_RBMX_like 68 147 - -
Ssu2g2203 240 SMART rrm1_1 70 143 IPR000504 GO:0003723
Ssu2g2203 240 MobiDBLite consensus disorder prediction 144 240 - -
Ssu2g2203 240 MobiDBLite consensus disorder prediction 1 21 - -
Ssu2g2203 240 Gene3D - 7 154 IPR012677 -
Ssu2g2203 240 PANTHER TRANSFORMER-2 SEX-DETERMINING PROTEIN-RELATED 2 236 - -
Ssu2g2203 240 MobiDBLite consensus disorder prediction 1 71 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2203 Ssu-Chr2 78282768 78285340 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2203 65 154 Eukaryotic Initiation Factors Gene Family AT1G49760 28.889 7.76e-07 47.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2203 K12897 - gmx:100527350 296.204