Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2199 ATGGTGATCGAGCATGACACTGAGAGCTGCGGGAGCAGAGCGGTGCAGTCGTCGCACGCGCATCCTCGGCATCACCGGCAGAAGCTGGAGGCGTACAATGAGGTGCTTCGTCGAATTCAGGAATCCGATTGCGAGGAGGCGCACGTTCCCGGCTTCGACGATCAGCTTTGGCTTCACTTCAATCGTCTTCCTGCTAGGTATGCATTGGATGTGAATGTGGAGAGGGCAGAAGATGTTCTAGCTCATAAGAAATTGCTCAAGTTGGCAGAGGACCCTGCTTCTCGACCTGCATTTCTAGTTCGCTTAGTTCAGGTATATCCTTTTGGTGGTGCAAATTATGTTGATTCAATACATTCAGATCCTTCTGAGAAAGAAGATGCACAGAGTTCTCTTAACTATTCCTTAAAGCAGGGAATTCATCCACCACCTACATTTGGTTCATCCTCTAATCTTGAAGCTCTTGCActtcaaacaactaaaaataacattgaagATGGGGGCAGTGCTATGAGTGTGACACCATATTTTAACCGgccCATGCACGAGATTACATTTTCAACAGTTGACAAGCCTAAACTCCTTAGTCAGTTAACTTCAATACTTGGTGAGATTGGACTGAATATTCAAGAAGCTCATGCATTTTCCACCACTGATGGATTTTCTCTGGATGTCTTTGTCGTTGAGGGATGGCCCAATGAGGAAACTGAGGAGCTGAAAGGTGTGttggaaaaggaaattttaaaggTTAAGGAGCAATATATGTCAAATCAAGGCATACTTTATGCTTCCAATGAACAGTGCCAGCCAAGGATGGAACCCTCCCCTCAATGCATTCAAATACCATCTGATGGAGCTGATGTCTGGGAAATTGACACCAACCAGCTGAAATATGAAAACAAAGTTGGCTCTGGGTCATTTGGTGACTTGTACAGAGGTACATATTGCAGTCAAGATGTGGCTATCAAAGTTCTTAAGCCTGAGCGCATAAGTACAGATATGCTGAGAGAGTTTGCACAAGAAGTTTATATCATGAGGAAGATTCGACACAAGAATGTGGTTCAGTTCATCGGCGCATGTACTAGGCCCCCAAATCTTTGTATTGTTACTGAGTTTATGTCTAAGGGAAGCTTATATGACTTTCTGCACAAACAAAGAGGTGTATTTAAGCTTCCATCTTTGCTAAAAGTAGCAATTGATGTTTCCAAGGGAATGAACTATTTgcaccaaaataatataattcacaGGGACCTCAAGACTGCCAATCTTCTGATGGATGAAAATGAAGTGGTCAAGGTTGCTGATTTTGGGGTTGCTAGAGTGCAAACTCAGTCTGGAGTGATGACAGCTGAAACTGGAACATACCGTTGGATGGCTCCTGAGGTCATTGAACACAAACCATATGACCAGAAGGCTGATGTTTTCAGTTTTGGAATAGCTCTTTGGGAGCTTTTAACGGGAGAACTGCCCTACTCATACTTGACCCCATTACAAGCAGCAGTCGGCGTGGTGCAGAagGGCCTACGGCCTACAATTCCCAAAAATACACACCCAAGACTTTCTGAACTGCTTCAGTGGTGCTGGCAGCAAGATCCGACGCAGAGACCAGATTTTTCTGAAATAATAGAAATTCTTCTGCAGATAGCAAAAGAGGTCAATGATCACAAAGACAAGTCATCCCATGGCTTTCTCTCAGCTCTTAGACGGGCCCATcattga 1716 0.4266 MVIEHDTESCGSRAVQSSHAHPRHHRQKLEAYNEVLRRIQESDCEEAHVPGFDDQLWLHFNRLPARYALDVNVERAEDVLAHKKLLKLAEDPASRPAFLVRLVQVYPFGGANYVDSIHSDPSEKEDAQSSLNYSLKQGIHPPPTFGSSSNLEALALQTTKNNIEDGGSAMSVTPYFNRPMHEITFSTVDKPKLLSQLTSILGEIGLNIQEAHAFSTTDGFSLDVFVVEGWPNEETEELKGVLEKEILKVKEQYMSNQGILYASNEQCQPRMEPSPQCIQIPSDGADVWEIDTNQLKYENKVGSGSFGDLYRGTYCSQDVAIKVLKPERISTDMLREFAQEVYIMRKIRHKNVVQFIGACTRPPNLCIVTEFMSKGSLYDFLHKQRGVFKLPSLLKVAIDVSKGMNYLHQNNIIHRDLKTANLLMDENEVVKVADFGVARVQTQSGVMTAETGTYRWMAPEVIEHKPYDQKADVFSFGIALWELLTGELPYSYLTPLQAAVGVVQKGLRPTIPKNTHPRLSELLQWCWQQDPTQRPDFSEIIEILLQIAKEVNDHKDKSSHGFLSALRRAHH 571
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2199 571 ProSiteProfiles Protein kinase domain profile. 295 563 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2199 571 ProSitePatterns Protein kinases ATP-binding region signature. 301 322 IPR017441 GO:0005524
Ssu2g2199 571 Gene3D Phosphorylase Kinase; domain 1 285 373 - -
Ssu2g2199 571 ProSiteProfiles ACT domain profile. 182 256 IPR002912 -
Ssu2g2199 571 PRINTS Tyrosine kinase catalytic domain signature 471 493 IPR001245 GO:0004672|GO:0006468
Ssu2g2199 571 PRINTS Tyrosine kinase catalytic domain signature 369 382 IPR001245 GO:0004672|GO:0006468
Ssu2g2199 571 PRINTS Tyrosine kinase catalytic domain signature 406 424 IPR001245 GO:0004672|GO:0006468
Ssu2g2199 571 PRINTS Tyrosine kinase catalytic domain signature 452 462 IPR001245 GO:0004672|GO:0006468
Ssu2g2199 571 PRINTS Tyrosine kinase catalytic domain signature 515 537 IPR001245 GO:0004672|GO:0006468
Ssu2g2199 571 PANTHER ACT-LIKE TYROSINE KINASE FAMILY PROTEIN 15 561 - -
Ssu2g2199 571 Pfam Protein tyrosine and serine/threonine kinase 295 544 IPR001245 GO:0004672|GO:0006468
Ssu2g2199 571 SUPERFAMILY ACT-like 180 244 IPR045865 -
Ssu2g2199 571 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Ssu2g2199 571 MobiDBLite consensus disorder prediction 1 26 - -
Ssu2g2199 571 Gene3D Transferase(Phosphotransferase) domain 1 374 566 - -
Ssu2g2199 571 SMART serkin_6 295 549 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2199 571 CDD STKc_MAP3K-like 301 544 - -
Ssu2g2199 571 CDD ACT_TyrKc 180 247 - -
Ssu2g2199 571 Coils Coil 232 252 - -
Ssu2g2199 571 SUPERFAMILY Protein kinase-like (PK-like) 273 544 IPR011009 -
Ssu2g2199 571 PANTHER SERINE/THREONINE-PROTEIN KINASE TNNI3K-RELATED 15 561 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2199 Ssu-Chr2 78203072 78217742 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2199 1 570 MAP Kinase Kinase Kinase AT4G35780 70.069 0.0 810
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK TKL-Pl-4 Ssu2g2199 PK_Tyr_Ser-Thr 2.5e-75 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2199 - - gmx:100816767 1096.65
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu6g1993 6 36399157 36400682 Ssu2g2199 2 78203072 78217742 PCT