Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2183 ATGGCAAACACACCACCTGTAGTGGAGAAAGAAATGGATAATGGAAAGGATGAGGATGGTGATGAAGGGGAAGTGGAGGAAGCAGTGAATGGGGATAAAAAAGCACAGAATATAACAATAAAGGTAGTGCGTGGTAAGGGTTCAAGAACAGCCTCATCCTCTAGCCAGAGTTTTTGTCAGACCGATGAATGTGGGGTGGACTTAAGCATGGCCAAGAGTTACAACCGGCGTCACAAGGTTTGTGAGCGACATTCTAAGGCTCCTGTTGTTTTAGTTTCTAGCATTCGTCAGAGGTTTTGCCAACAATGTAGCAAGTTCCATGAACTTGCACAGTTTGATGACACCAAAAGAAGTTGCAGGATAAGACTGGCAGGGCATAATGAGCGTAGAAGGAAAGCTCGCACGGACCTATCCTTGGGAGGTGATCAGCATCAGTCACACGCCCATCTCAAGTGA 456 0.4627 MANTPPVVEKEMDNGKDEDGDEGEVEEAVNGDKKAQNITIKVVRGKGSRTASSSSQSFCQTDECGVDLSMAKSYNRRHKVCERHSKAPVVLVSSIRQRFCQQCSKFHELAQFDDTKRSCRIRLAGHNERRRKARTDLSLGGDQHQSHAHLK 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2183 151 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 9 143 IPR044817 GO:0003677
Ssu2g2183 151 MobiDBLite consensus disorder prediction 130 151 - -
Ssu2g2183 151 SUPERFAMILY SBT domain 58 136 IPR036893 GO:0003677|GO:0005634
Ssu2g2183 151 MobiDBLite consensus disorder prediction 1 32 - -
Ssu2g2183 151 Pfam SBP domain 59 132 IPR004333 GO:0003677
Ssu2g2183 151 Gene3D - 49 120 IPR036893 GO:0003677|GO:0005634
Ssu2g2183 151 ProSiteProfiles Zinc finger SBP-type profile. 56 133 IPR004333 GO:0003677
Ssu2g2183 151 PANTHER - 9 143 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2183 Ssu-Chr2 77954682 77955495 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2183 52 136 SBP-box Gene Family AT2G33810 61.176 8.04e-35 116
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Ssu2g2183 SBP 1.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2183 - - gmx:100820357 202.216
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2183 2 77954682 77955495 Ssu2g2183 2 77954682 77955495 ECH