Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2181 ATGGCATGTCTGAGCCGCCGCCACCACCGCACCTGGCTCACTTCTCCCAACATGCTCCAACGCTGCCCTCTCTCTGCCCACCACCACCGTCTCCAAGACGACGATGCCGAGCCAATTTACCTCCCTCCTCCCTCCTCCGCCTATCGCCTCTTCCCCGTTTACGCCATGGGCACGGCCGAGCCGAGCCCCGAACCCGAATTGGACGGACCCGACCCGATTTGGGACGCCGTCAGGGACGAAGCGAAGCTCGAGGCGGAGAAGGAGCCGATTCTGAGTAGCTTCTTGTACGCTAGTATTTTGGCGCATGATTGCTTGGAGCAAGCATTGTCGTTTGTCGTGGCCAACCGTCTCCAAAACCCTACTCTCTTGGCCACTCAGCTCATGGATATTTTCTGCAATGTCATTATGCATGACAAAGCTATCCAGCGATCCATTCGCCTTGATGTTcagGCATTTAAAGATCGGGACCCTGCTTGTTTGTCGTATTGCTCCGCGCTTTTGTATATGAAGGGTTATCATGCTCTGCAAGTTCATCGAGTAGCCCATGCATTGTGGCACCAGGGACGCAAAGTCTTGGCCCTGGCTTTGCAAAGCCGTGTTAGTGAGGTTTTTGGAGTGGACATTCATCCTGCTGCGAAAATTGGGGAGGGAATTTTATTAGATCATGGGACAGGTGTGGTTATTGGTGAAACTGCTATTGTTGGAAACAGAGTTTCACTGATGCATgGTGTAACATTAGGAGGCACGGGGAAGGAAATTGGTGATCGCCATCCCAAAGTAGGTGAAGGGGCACTAATTGGAGCTAGTGCAACGATACTTGGGAATATAAGGATTGGTGAAGGTGCGATGATAGCTGCGGGCTCCCTTGTTTTAAAAGATGTCCCTCCCCATAGCATTGCGGCAGGAATACCAGCAAAAGTTATTAGTGGTCTAAAGGAGCATGACCCATCTTTAACCATGAAGCATGATGCTACTAAAGAATTTTTCACACATGTTGCTACTAACTTCAGAGATGAAAAGCCCAGTGGAGCTCAAAATCCAGGTAGAAATGAAGTGAACAATTGA 1065 0.5005 MACLSRRHHRTWLTSPNMLQRCPLSAHHHRLQDDDAEPIYLPPPSSAYRLFPVYAMGTAEPSPEPELDGPDPIWDAVRDEAKLEAEKEPILSSFLYASILAHDCLEQALSFVVANRLQNPTLLATQLMDIFCNVIMHDKAIQRSIRLDVQAFKDRDPACLSYCSALLYMKGYHALQVHRVAHALWHQGRKVLALALQSRVSEVFGVDIHPAAKIGEGILLDHGTGVVIGETAIVGNRVSLMHGVTLGGTGKEIGDRHPKVGEGALIGASATILGNIRIGEGAMIAAGSLVLKDVPPHSIAAGIPAKVISGLKEHDPSLTMKHDATKEFFTHVATNFRDEKPSGAQNPGRNEVNN 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2181 354 Pfam Bacterial transferase hexapeptide (six repeats) 257 290 IPR001451 -
Ssu2g2181 354 SMART SATase_N_2_a 73 177 IPR010493 GO:0005737|GO:0006535|GO:0009001
Ssu2g2181 354 Pfam Serine acetyltransferase, N-terminal 73 176 IPR010493 GO:0005737|GO:0006535|GO:0009001
Ssu2g2181 354 Gene3D serine acetyltransferase, domain 1 57 206 IPR042122 -
Ssu2g2181 354 Gene3D Hexapeptide repeat proteins 207 335 - -
Ssu2g2181 354 ProSitePatterns Hexapeptide-repeat containing-transferases signature. 266 294 IPR018357 GO:0016740
Ssu2g2181 354 PANTHER SERINE ACETYLTRANSFERASE 2-RELATED 44 337 - -
Ssu2g2181 354 CDD LbH_SAT 204 304 IPR045304 -
Ssu2g2181 354 PANTHER SERINE ACETYLTRANSFERASE 44 337 - -
Ssu2g2181 354 SUPERFAMILY Trimeric LpxA-like enzymes 72 321 IPR011004 -
Ssu2g2181 354 TIGRFAM cysE: serine O-acetyltransferase 145 306 IPR005881 GO:0005737|GO:0006535|GO:0009001
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2181 Ssu-Chr2 77917620 77921228 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2181 51 343 Miscellaneous Gene Families AT2G17640 74.915 1.43e-155 438
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2181 K00640 - gmx:100775449 657.907
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2181 2 77917620 77921228 Ssu2g2181 2 77917620 77921228 ECH
Ssu2g2181 2 77917620 77921228 Ssu5g0784 5 20041690 20045284 PCT