Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2176 ATGGTGATTTCAGATGAGAACAGTTCTAAACCAATCAACCCCACAAGTTTTCAAGGAGGGATAGATTGTGTGGGAAACAGAAAGGCGGGGCAGAACAGAAGGGCGTTAAGCGTTATCAATCAGGATCTGGTAGCGGAAGGGAGACCTTACCCTTGTGTCGTTAACAAGAGGGCCTTGGcagaAAAACATGATGTTTGTGAGAAGAAGCAGGCGGATCCGGTGCATCGACCCATCACAAGGAGGTTTGCTGCACAAATTGCTAGCACGCAGCAATCTCGTGCTGAGGAAACCAAGAGGTCAAACTTGGGAAATTCGAATTCGAATGGATTTGGAGAGAGTATATTTATCGATGACGAACACAAGCCAACGGATGACCAGCCGGTGCCCATGTCTTTAGAGCAAACAGAACCAATGCATAATGAATCAGATCAGATGGAGGAAGTTGAGATGGAGGATATAATTGAAGAGACTGTTTTGGACATTGATATCTGTGATGCTAATAATCCTCTTGCAGTCGTGGACTATATTGAAGATCTTTATTCCCACTACAGAAAAATGGAGGGTACTAGCTGTGTCTCACTGAATTATATGGCACAACAATTTGACATTAATGAAAGGATGAGGGCTATCCTAATTGACTGGCTTATTGAGGTGCACGACAAATTTGACCTCATGCACGAGACATTGTTTCTTACTGTTAATCTTATAGATCGATTTTTGGCAAAGCGGACAGTGGTAAGAAAGAAGCTTCAGTTGGTTGGTCTAGTTGCCATGCTTTTGGCATGCAAGTATGAAGAAGTTTCGGTACCTGTGGTGGGGGATCTAATTCTCATATCAGACAAAGCATACACAAGGAAGGAAGTTCTGGAAATGGAGAAGTTGATGGTCAATACATTGCAGTTTAACATGTCTGTGCCAACAGCATACGTTTTTATGAAAAGGTTCCTAAAGGCAGCTCAAGCAGACAGAAAGCTTGAACTACTAGCTTTCTTCTTGGTAGAGCTATCTGTAGTGGAATATGAGATGCTGAAGTTCTCTCCATCTCTGCTAGCAGCAGCTGCTGTCTATACAGCTCAATGCACTATTTATGGTTTCAAACAATGGAGTAAAACATGTGAATGGCACTCCAATTACTCAGAAGATCAGCTATTAGAGTGCTCTACATTAATGGTTGATTTTCACCAGAAGGCTGGGAATGGGAAACTTACTGGGGTACATAGGAAGTACTGCTCATCTAAATTTAGCTACACTGCAAAATGTGAACCAGCACGTTTTCTTCTGGAGAACAACCCATTGTAG 1299 0.4234 MVISDENSSKPINPTSFQGGIDCVGNRKAGQNRRALSVINQDLVAEGRPYPCVVNKRALAEKHDVCEKKQADPVHRPITRRFAAQIASTQQSRAEETKRSNLGNSNSNGFGESIFIDDEHKPTDDQPVPMSLEQTEPMHNESDQMEEVEMEDIIEETVLDIDICDANNPLAVVDYIEDLYSHYRKMEGTSCVSLNYMAQQFDINERMRAILIDWLIEVHDKFDLMHETLFLTVNLIDRFLAKRTVVRKKLQLVGLVAMLLACKYEEVSVPVVGDLILISDKAYTRKEVLEMEKLMVNTLQFNMSVPTAYVFMKRFLKAAQADRKLELLAFFLVELSVVEYEMLKFSPSLLAAAAVYTAQCTIYGFKQWSKTCEWHSNYSEDQLLECSTLMVDFHQKAGNGKLTGVHRKYCSSKFSYTAKCEPARFLLENNPL 432
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2176 432 PANTHER CYCLINS 22 426 IPR039361 -
Ssu2g2176 432 MobiDBLite consensus disorder prediction 86 128 - -
Ssu2g2176 432 Pfam Cyclin, C-terminal domain 306 421 IPR004367 -
Ssu2g2176 432 CDD CYCLIN 207 296 IPR013763 -
Ssu2g2176 432 SMART Cyclin_C_2 306 423 IPR004367 -
Ssu2g2176 432 CDD CYCLIN 304 391 IPR013763 -
Ssu2g2176 432 Pfam Cyclin, N-terminal domain 178 304 IPR006671 -
Ssu2g2176 432 Gene3D - 178 418 - -
Ssu2g2176 432 MobiDBLite consensus disorder prediction 86 112 - -
Ssu2g2176 432 PANTHER CYCLIN-B2-1 22 426 - -
Ssu2g2176 432 PIRSF Cyclin_A_B_D_E 22 431 IPR039361 -
Ssu2g2176 432 SUPERFAMILY Cyclin-like 305 423 IPR036915 -
Ssu2g2176 432 Gene3D - 192 304 - -
Ssu2g2176 432 SUPERFAMILY Cyclin-like 167 303 IPR036915 -
Ssu2g2176 432 ProSitePatterns Cyclins signature. 208 239 IPR006671 -
Ssu2g2176 432 SMART cyclin_7 310 392 IPR013763 -
Ssu2g2176 432 SMART cyclin_7 213 297 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2176 Ssu-Chr2 77811120 77814304 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2176 1 427 Core Cell Cycle Gene Families AT1G20610 59.954 9.70e-178 501
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2176 K21777 - gmx:100798068 797.349