Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2165 ATGGGTCTCTGCTTTACTTCGCTCGCTCGCCACCAAACACCCTCTAAATCTAAATCCCCTCGATATTCAGGTTCAGCGCATGAGAGTAAGAACGCGGCAACATCCTTGGGGAGCGTGCACGTGCAAGGAAAGAGTATTGAAAGCACTAGTGTTAATGGAGGAAGCAACAGTGTTGTATTCCCGAGTGTGGAAATGCGGAACTTGAAGGAGTTCAATTTTGCGGATTTGAAAGCGGCCACCAAGGGTTTCAAGTCATTGCTTGGTGAGGGAGGTTTTGGCAAAGTTTACAAAGGATGGTTGGATGAGAGGACACTGACACCCACCAAAGCTGGTTCTGGAATGATGGTGGCCATTAAAAAGTTGAATCCAGAAAGTATGCAGGGCCTTAAAGAGTGGCAGTCTGAAATCAACTTTTTAGGAAGGATTTCTCACCCAAACCTGGTCAAGCTTTTGGGTTACTGTTGTGACGATGTGGAATTTCTCCTTGTGTACGAATTCATGCCAAAGGGAAGCTTGGAGAATCATCTATTTTGGAGAAATACTAACACAGAACCACTCTCTTGGGAAACCCGACTCAAAATAGCTATTGGTGCAGCTCGGGGTTTGGCTTTTTTGCACACCTCAGAAAAGCAAATCATATACAGAGATTTCAAAGCCTCCAATATACTACTAGATGAGGATTACAATgcaaaaatttcagattttggcTTGGCCAAATTAGGGCCTTCTGTGGGAAATTCACACGTGACTACCAGGATCATGGGAACATATGGCTATGCTGCTCCAGAATACATTGCAACAGGCCACCTATATGTCAAAAGTGATGTCTATGGTTTTGGTGTAGTGCTGCTTGAAATGTTGACAGGTTTGCGGGCACTTGATAGAAGCCGCCCAACAGGGCAACAGAATCTGGTTGAATGGATTAAGCCTTCTCTCTCTGATAAAACAAAGTTGAGAAGCATTGTGGATGAGAGGATAGAGGGTCAGTATTCAACCAAGGCAGCATTGAAAGCAGCACAGCTTACTCTAAAATGCCTTGAACCTGACCATAAAAGACGTCCTCCTATGAAAGATGTTCTAGAGACATTGGAACAGATTGAAGCTATCAAGGATAGAAGGAATGAGTCCAAGAAACATTGTACTAAGTTTGCAACTATGCACAGTTGCCAATAG 1173 0.4322 MGLCFTSLARHQTPSKSKSPRYSGSAHESKNAATSLGSVHVQGKSIESTSVNGGSNSVVFPSVEMRNLKEFNFADLKAATKGFKSLLGEGGFGKVYKGWLDERTLTPTKAGSGMMVAIKKLNPESMQGLKEWQSEINFLGRISHPNLVKLLGYCCDDVEFLLVYEFMPKGSLENHLFWRNTNTEPLSWETRLKIAIGAARGLAFLHTSEKQIIYRDFKASNILLDEDYNAKISDFGLAKLGPSVGNSHVTTRIMGTYGYAAPEYIATGHLYVKSDVYGFGVVLLEMLTGLRALDRSRPTGQQNLVEWIKPSLSDKTKLRSIVDERIEGQYSTKAALKAAQLTLKCLEPDHKRRPPMKDVLETLEQIEAIKDRRNESKKHCTKFATMHSCQ 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2165 390 ProSitePatterns Serine/Threonine protein kinases active-site signature. 212 224 IPR008271 GO:0004672|GO:0006468
Ssu2g2165 390 ProSiteProfiles Protein kinase domain profile. 81 366 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2165 390 ProSitePatterns Protein kinases ATP-binding region signature. 87 120 IPR017441 GO:0005524
Ssu2g2165 390 PANTHER SERINE/THREONINE-KINASE CX32, RELATED PROTEIN 22 376 - -
Ssu2g2165 390 CDD STKc_IRAK 87 366 - -
Ssu2g2165 390 SUPERFAMILY Protein kinase-like (PK-like) 58 365 IPR011009 -
Ssu2g2165 390 Pfam Protein tyrosine and serine/threonine kinase 84 363 IPR001245 GO:0004672|GO:0006468
Ssu2g2165 390 Gene3D Phosphorylase Kinase; domain 1 56 166 - -
Ssu2g2165 390 MobiDBLite consensus disorder prediction 9 38 - -
Ssu2g2165 390 Gene3D Transferase(Phosphotransferase) domain 1 167 388 - -
Ssu2g2165 390 PANTHER OS01G0588500 PROTEIN-RELATED 22 376 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2165 Ssu-Chr2 77605287 77611986 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2165 4 363 Glycoside Hydrolase AT3G07070 42.623 1.14e-96 293
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu2g2165 PK_Tyr_Ser-Thr 1.3e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2165 - - gmx:100778116 612.453