Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2157 ATGGGTTCAATGAAAAAACTGATCAATGAGGAGCTATCCAAACAATCAAGCACTAGACAAAATGCGCCAAGTCTTGTGGCAAGGTTGATGGGGATAGATACGATGCCATTAGACACTAAATATGTTGTTCCATCAGATAAAAGAATGAGTGAAAATAAGGGGAAGAGGTCTTTGGACAAAGTAGTGAATCGAAGGGGTTCAGTTAGTTGGGGTTCTTCCAACTTTAATTCTTCTAGCCAGATGGATTTTGATTCATTATACGAAGATatagaagatgatgatgatggatgGAATCAGAGTTTTGGAGAACCAAGGCCACGAGAACATCCTCAGGAAGAGGAACTCCAGAAATTCAAGAGAGAGTTTGAAGCATATCAGGCAGCAAGGTTTCTGGAGTGTTCAAAGGTTGCTGAAATTGGCAGTGTTCCTAGACGATTGCTTGCTCAAGAAAACCTGAACAAGGAAAAAGTGACGCATAATGATTTAGTTTCACAAAGAGCAGCAGCAGGGAAACTCGCAGATCTTGACAGCCATTCATTCAGAACAAAGCCACCTGACAGTTATGGTTCAGAGTATCATGGTAACATGATGGAGTTAATCCCAGCTATGCAGAGGAAAACCTTTCCTTCAAGGAGCAGAACACTAAGTAGAGACTTTGAGGAGTCCTTAATGCTGAAATCTTGCAACAGATTAGACACATCTTCTTCTCCCACTAGGATAGTTATCTTGAAGCCTGGTCCTGATAGCATTTGCAATGAAGAGAATTGGACCATTTCGTCAGGAACTATACAAGGGAGAAATAGTATAGAAGATTTTCTTGAAGAGGTGAAAGAGCGTTTGAAATGTGAACTGCAAGGGAAAATTGTCAAAAAAGGTTCTGTGGTTCGAGGGAGTGGAATTGAGACACCTTACAATGAAAAACCATCTGATCCTAAACTAATAGCCCGTCATATAGTAAAGCAAGTCAGAGAAAGTGTGACTAGAGATGCTGACACAAATTTACTCGGCTCAGAATCAACAGGATCATACAAAAGTGAAATGCAGTTCAATGGACCAAGCTCCCCAGAATTTATCAGCAGAGATACCAGGAGGTTCTTGTCAGAGAGGCTAAGAAATGTTGTGAGAAGTGAAACACATGCGGACATTCCTGAGGGAAAATCAAGGTCACTTGCATTAGATAACCATAAAGCTAGACTAAAGCAAACAGGGGATATTAAGAAGTATGCAAGTAACTGGGAAATTTCCAAAGAGGACACAGCAATACAAACAGGATCTTTCAGGCATGAACTAGATGAGAATGTATTGCTCCACAAGGAGTTGTCCCCAAGGAACCTTGTAAGATCCTTGTCTGCTCCTGTATCACGATCAGGAACGTCATTTGGGAAGCTTCTTCTAGAGGACCGCCACATTTTAACTGGCGCTCATATCCAGAGGAAGCTTGAAGCTGTTGAAACCATGTCTGTTGATGTCAAAAAACCGAAAAAGGatagatttaatattaaagaaagaGTCTCCAATTTTAGATACAGTCTTGCTCTAAGAAGGAGGCTTTTTGGGAGAAGGATTCAATCAATGGTAGAATCACATGGCAATGAATATGGTCCCATGGTGAGAGATGTCACAAGTGGACCAACAGTTCTCATGAACTGTGGTGAGAGGCACGAGAACTCCACTGAGGTACCTCCTAGTCCTGCATCTGTGTGCAGCAGTGTTCATGAAGACTTTTGGAGGCGGACTGAATATTTAAGTCCAATATCAACTCCTGATGTGTCTTCAAGAGACGATAGTGTTGTGCCCCAGGTTTTCAGGGATATCAGCTCTGGTTTGAATGAGCTAAGGAGACAACTCAATCAACTTGAATCTGATGGTCCTGAAGACTTCACTGTTAAACAGGAGCCTTCTGAGTCTGCATTAGATCAATTAGAGGATCCAGCAGAATCTTACATAAGAGATCTACTTGTTGCTTCTGGTCTGTACTATGGTTCATGGGATAAATCTTTATTAAGAGAGGACACATTTGCAAAGCCTATTGGCAACACTGTTTTAGAAGAAGTGGAAGAATCTCACAAGAAGTTAGTCAAGGAAAATGATGAAAGGTGTATAGAGGATCAGAATGAGAATAAGCTAGACCACAGGGTTTTGCTTGATTTGTTAAATGAGGCACTTTCAGTTGTTCTTGGACCACCTTTGACATTGTCTAGATTCAGAAGGAAATTAAGCAACTCTTCCATGTTGCCACCACCTTCTGGAAAGGAACTGTTGAACTTAGTATGGGACATTATCCGTGTTTCTTTATATCCTCCATCTGACATATCTACTTATTCACTTGATACTTTGGTGGCTCAACACCTAGGATCCATCCCTTGGTCTGGATTAATAAACGATGAGATCAATATATTGGAAAGAGATATAGAATGTCTAATAACTGATGATCTGGTTGAAGAACTCACAAAGGATATGTTCTAA 2466 0.4023 MGSMKKLINEELSKQSSTRQNAPSLVARLMGIDTMPLDTKYVVPSDKRMSENKGKRSLDKVVNRRGSVSWGSSNFNSSSQMDFDSLYEDIEDDDDGWNQSFGEPRPREHPQEEELQKFKREFEAYQAARFLECSKVAEIGSVPRRLLAQENLNKEKVTHNDLVSQRAAAGKLADLDSHSFRTKPPDSYGSEYHGNMMELIPAMQRKTFPSRSRTLSRDFEESLMLKSCNRLDTSSSPTRIVILKPGPDSICNEENWTISSGTIQGRNSIEDFLEEVKERLKCELQGKIVKKGSVVRGSGIETPYNEKPSDPKLIARHIVKQVRESVTRDADTNLLGSESTGSYKSEMQFNGPSSPEFISRDTRRFLSERLRNVVRSETHADIPEGKSRSLALDNHKARLKQTGDIKKYASNWEISKEDTAIQTGSFRHELDENVLLHKELSPRNLVRSLSAPVSRSGTSFGKLLLEDRHILTGAHIQRKLEAVETMSVDVKKPKKDRFNIKERVSNFRYSLALRRRLFGRRIQSMVESHGNEYGPMVRDVTSGPTVLMNCGERHENSTEVPPSPASVCSSVHEDFWRRTEYLSPISTPDVSSRDDSVVPQVFRDISSGLNELRRQLNQLESDGPEDFTVKQEPSESALDQLEDPAESYIRDLLVASGLYYGSWDKSLLREDTFAKPIGNTVLEEVEESHKKLVKENDERCIEDQNENKLDHRVLLDLLNEALSVVLGPPLTLSRFRRKLSNSSMLPPPSGKELLNLVWDIIRVSLYPPSDISTYSLDTLVAQHLGSIPWSGLINDEINILERDIECLITDDLVEELTKDMF 821
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2157 821 Coils Coil 602 622 - -
Ssu2g2157 821 MobiDBLite consensus disorder prediction 1 24 - -
Ssu2g2157 821 Pfam DUF761-associated sequence motif 18 36 IPR032795 -
Ssu2g2157 821 Pfam Domain of unknown function (DUF4378) 647 815 IPR025486 -
Ssu2g2157 821 MobiDBLite consensus disorder prediction 98 113 - -
Ssu2g2157 821 MobiDBLite consensus disorder prediction 333 354 - -
Ssu2g2157 821 MobiDBLite consensus disorder prediction 94 113 - -
Ssu2g2157 821 MobiDBLite consensus disorder prediction 9 24 - -
Ssu2g2157 821 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 3 820 - -
Ssu2g2157 821 PANTHER RB1-INDUCIBLE COILED-COIL PROTEIN 3 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2157 Ssu-Chr2 77513928 77517252 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2157 4 820 TRM (TON1 Recruiting Motif) Superfamily AT2G17550 41.170 5.72e-153 462
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2157 - - gmx:100779720 1416.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2157 2 77513928 77517252 Ssu2g2157 2 77513928 77517252 ECH
Ssu2g2157 2 77513928 77517252 Ssu5g0805 5 20710210 20714083 PCT