Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2153 ATGTCGTGTTCGTCGTCATCAGGGTCCGAGGAAGACGATGAGGGATTCGACTCTTACCGGAAAGGAGGGTACCACGCCGTCAGAGTCGCCGATCAGTTCGCCGGCGGCAGGTATATAGCGCAGAGGAAGCTGGGTTGGGGTCAGTTTTCCACCGTGTGGCTTGCTTACGATACTAAAACTTCTTCGTATGTTGCTCTCAAGATCCAGAAAAGTGCAGCCCAGTTTGTTCAGGCTGCCCTTCATGAGATCAATGTTCTTTCATCCATTGCTGACGGTGAtccatcaaattcaaaatttgtcaTTCAATTGATTGACCACTTTAAGCACACAGGTCCAAATGGGCAACATCTTTGCATGGTCCTTGAGTTTCTTGGTGATAGCTTGCTTCGCTTGATCAGATATAACCGTTACAAAGGTCTTCCATTGAATAAAGTTAGAGAGATTTGCAAATCCGTTTTGATTGGTTTGGATTACTTGCATACTGATCTTGGTATAATCCACACTGACCTAAAACCTGAAAACATTCTTTTATGCTCAACCATTGATCCTGTGAAAGACCCTTTTAGATCTGGACTCTCCCCAATTCTAGAGCGGCCTGAGGGAAACACAAATGGAGGAGTCACAAGTCTTGTTGAAAAAAGGTTGAAAAGGAGAGCAAGGAAGGCAGTTGCTAAGATATCTGGAAGAAGAGAGTCAATGGGAGGAATAGGAGATGCTGCAAAGACTAGTAGAAATATTGATGGGATTGATGTGAGATGCAAGATAGTAGATTTTGGAAATGCTTGTTGGGCTCATAAGCAGTTTGCAGAAGAAATACAGACAAGGCAGTACAGAGCGCCTGAAGTTATACTGAAGTCTGGCTATTCCTTCTCTATTGACATGTGGTCTTTTGCTTGCATTGCTTTTGAACTTGCCACTGGAGATATGTTGTTTACACCCAAGGGTGGACAAGGTTTTAGTGAGGATGAGGATCACCTTGCCCTAATGATGGAACTCCTTGGAAAGATGCCCCGGAAGATTGCTACTGGTGGACAATCCAAGGATTTCTTTGACAGGCATGGGGATCTAAAAAGGATTCGAAGGCTAAAGTTTTGTCCACTTGACAAATTGCTgactgataaatataaattttcagtGAATGATGCTCAAGAGTTTTCAGAATTTCTTTTACCACTCTTTGATTTTGTGCCAGAGAAGCGACCAACCGCACAACAGTGCCTGCAACACCCATGGCTGAACTGCACGGAGTCCCCTCCAAATGAATTGAGAAATGAATGTGCTGTGGAAAAGGTGGATGTTGGGATGAGCAACCTTAAAATCAGGGTGGGAAAGTGA 1335 0.43 MSCSSSSGSEEDDEGFDSYRKGGYHAVRVADQFAGGRYIAQRKLGWGQFSTVWLAYDTKTSSYVALKIQKSAAQFVQAALHEINVLSSIADGDPSNSKFVIQLIDHFKHTGPNGQHLCMVLEFLGDSLLRLIRYNRYKGLPLNKVREICKSVLIGLDYLHTDLGIIHTDLKPENILLCSTIDPVKDPFRSGLSPILERPEGNTNGGVTSLVEKRLKRRARKAVAKISGRRESMGGIGDAAKTSRNIDGIDVRCKIVDFGNACWAHKQFAEEIQTRQYRAPEVILKSGYSFSIDMWSFACIAFELATGDMLFTPKGGQGFSEDEDHLALMMELLGKMPRKIATGGQSKDFFDRHGDLKRIRRLKFCPLDKLLTDKYKFSVNDAQEFSEFLLPLFDFVPEKRPTAQQCLQHPWLNCTESPPNELRNECAVEKVDVGMSNLKIRVGK 444
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2153 444 ProSitePatterns Protein kinases ATP-binding region signature. 44 67 IPR017441 GO:0005524
Ssu2g2153 444 PANTHER MITOGEN-ACTIVATED PROTEIN KINASE 5 444 - -
Ssu2g2153 444 PANTHER SERINE/THREONINE KINASE FAMILY PROTEIN 5 444 - -
Ssu2g2153 444 ProSiteProfiles Protein kinase domain profile. 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2153 444 ProSitePatterns Serine/Threonine protein kinases active-site signature. 165 177 IPR008271 GO:0004672|GO:0006468
Ssu2g2153 444 SUPERFAMILY Protein kinase-like (PK-like) 32 419 IPR011009 -
Ssu2g2153 444 Gene3D Phosphorylase Kinase; domain 1 24 123 - -
Ssu2g2153 444 CDD STKc_SRPK 27 412 - -
Ssu2g2153 444 Pfam Protein kinase domain 252 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2153 444 Pfam Protein kinase domain 39 178 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2153 444 Gene3D Transferase(Phosphotransferase) domain 1 92 412 - -
Ssu2g2153 444 SMART serkin_6 38 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2153 Ssu-Chr2 77471317 77474884 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2153 4 413 EF-hand Containing Proteins AT5G22840 52.052 1.12e-170 488
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_SRPK Ssu2g2153 Pkinase 1.9e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2153 K08832 - gmx:100784192 814.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2153 2 77471317 77474884 Ssu2g2153 2 77471317 77474884 ECH
Ssu2g2153 2 77471317 77474884 Ssu5g0811 5 20891340 20895449 PCT