Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2149 ATGATTGAAGTTTGGCTCTTGGCTTTAATGGTTCTCTCCAATGGGTTCTCTTCAACTGGGGCTGCCATGCATAATTCCACAAGACcagattttgtaaatattgggGCTCTCTTCTCTTACAATACCAGTGTTGGTAGAACTATAAAAATTGCTATAGAAGCTGCAGTTGAAGATGTAAATTCTGATCCAAATATTCTTGGTCAAACCAAGCTGAACCTCTCACTGCAAGAAGATTCTAAGTATAGAGGTTTCCTGAGCATTGCCGAGGTTTTGCAGGTCATGGCAAGACACACGGTGGCAATAATAGGTCCCCATAGCTCTGTAACAGCTCATGTCGTAACTCATATTGCAAATGAGCTCCAAGTTCCTCTGTTGTCATTTTCAGCTTTGGACCCTACCCTTTCTTCGCTTCAATTCCCATTCTTCATTAGAACTTGTCATAGTGATCTTTATCAAATGGCTGCAATAGCAGACCTTGTTGACTACTATGATTGGAAAGATGTTATTGCTGTCTACATTGATGATGATAATGGGAGAAATGGAATTGGTGCATTAGGTGATAAGCTTGCTGAGAAGCGCAGCAGGATATCATATAAAGCACCTTTGAGCCCCGAAGCATCTATGGAAGAGATTACTAATGTGCTTGTTCAGGTGGCTCTGGCAGAATCACGGGTAATAGTTGTTCATGCCAATACTCAATGGGGCCCCAAGGTGTTTACTGTTGCAAATAATCTTGGGATGATGGGAACTGGGTATGTGTGGATTGCCACTGCTTTCCTCTCTGCTCTGCTTGATATCAACAGTCCCGTCTCTTCAGATACAATGGATGAAATTCACGGAGTTCTTACACCGCGAATTTACACACCAGATTCAGAGCTCAAAAGGAGGTTTGTTTCTAGGTGGAAAAACGTGACTAGTGGAAATACTGCTAATGTCCCCCTTGGATTGAGCTTTTTAGCTCTCTATGCATATGACACTGTTTATGTGCTTGCTCATGCACTTGATACATTTCTCAAACAAGGTAACCAAATTACGTTCTCAACTGATTCAAAGCTATCTAGCATACATGGAGACAACTTGCATCTTGATGCCTTGAAAATCTTTAATGAAGGAAATTTGTTACGTGGTAATATTTATGAGGTTAACATGACTGGTGTATCGGGTCCATTCAAGTATACATCTGATAGAAACCTTGTTAATCCTGCATATGAAATCATTAATGTGGTTGGAACAGGAGTTCGGAGGATCGGTTATTGGTCTAATTACTCTGGATTATCAGTTGTTCCTCCAGAAGCTCTTTATTCCAAACCAGCCAATCTTTCCAGGGTAAATCAAAAGCTTTTCCCTGTGATTTGGCCTGGAAACACAGACCAGAGACCTCGTGGTTGGGTTTTTCCAAACAATGGAAGGCTCTTAAAAATTGGAGTACCAAAAGCTGTTATTTACCCTGAATTTGTCTCGCAAATAAAAGGCACTGATATGTTTCAGGGATTCTGCATTGATGTGTTTCTTGCTGCAGTGAACCTGTTGCCTTATGCTGTCCCCTATAAGTTCATCCCATATGGGGATGGTAAGAACAATCCTAGTGCAACTGAGCTTACCCGTCTGATCACAACGGGTGAATTTGATGGTGCAGTAGGTGACATTGCAATTACTACAGAAAGAACAAGGATGGTGGATTTTACTCAGCCATATATTGAGTCTGGTCTAGTGGTAGTAGCACCTGTTAAGAGGGCAGAATCCAATGCTTTGGCCTTTTTGGCCCCGTTTACACCAAAGATGTGGTGTGTCACAGCTATCTTTTTCATATTGGTGGGAGCTGTTGTTTGGATTTTGGAGCATAGGGTGAATGATGAATTTAGGGGACCACCCAAAAAACAAGTAGTTACTGTTTTATGGTTTAGTTTTTCAACAATGTTCTTTTCCCACAGGGAAAATACAGTGAGCACACTTGGTCGCTTTGTGTTGATTATATGGTTATTTGTAGTTCTTATAGTTAACTCAAGTTACACGGCAAGTCTAACCTCAATCCTCACAGTGCAACAGCTTTATTCGCCCATTAAAGGCATTGAAAGTTTAGTAAATGGCAAAGAGCCTATTGGGTACACGCAGGGTTCTTTTGCTAGAAATTATTTAGTTCAGGAAATTGGTATTGATGAGTCCAGGCTTGTTCCTCTAACAACAGCAGAGGAAGCTGCTAAAGCACTGAGAAATGGTCCCCAAAATGGGGGTGTTGCTGCTTACATTGATGAGCTTGCTTACATTGACATCTTCCTCTCCACCCGTTGTGATTTAACTGTTGTAGGTCGAGAGTTCACCAGAAACGGTTGGGGATTTgCCTTTCCTCGAGACTCACCGTTATCAGTTGACCTCTCAACTGCCATATTGCAAATGATAGATAATGGAGATTTACAAAGGATCCATGACAAATGGCTTTTGAGTATTGCTTGCCTATCACAAGGTGCAAAGTTTGAAGTGGAAAGACTCCAACTTAAAAGCTTTTGGGGCCTCTATATGATCTGTGGGCTTGCCTGTTTGCTTGCActcttcatatattttatacagATTTGGAGGCAATACCGCAAGCACTACTCAGAGGAACTCGAGTCCTCTGACGGCCAAAGCTTAGGATCATCAAGATCCGTACGTCTTAAGACTTTCCTTTCATTTGtagatgaaaaagaagagaCCATTAAGAGCGTGTCCAAGAGAAGGAAAATGGAGAGGATCTCATACAGAAGCAGTGAGGGAGGCTCATCCATCAACTCCAATAAGGGATATGCTTCACGCAGAAGTGAATGTGGTACCGAAGTATGA 2817 0.4107 MIEVWLLALMVLSNGFSSTGAAMHNSTRPDFVNIGALFSYNTSVGRTIKIAIEAAVEDVNSDPNILGQTKLNLSLQEDSKYRGFLSIAEVLQVMARHTVAIIGPHSSVTAHVVTHIANELQVPLLSFSALDPTLSSLQFPFFIRTCHSDLYQMAAIADLVDYYDWKDVIAVYIDDDNGRNGIGALGDKLAEKRSRISYKAPLSPEASMEEITNVLVQVALAESRVIVVHANTQWGPKVFTVANNLGMMGTGYVWIATAFLSALLDINSPVSSDTMDEIHGVLTPRIYTPDSELKRRFVSRWKNVTSGNTANVPLGLSFLALYAYDTVYVLAHALDTFLKQGNQITFSTDSKLSSIHGDNLHLDALKIFNEGNLLRGNIYEVNMTGVSGPFKYTSDRNLVNPAYEIINVVGTGVRRIGYWSNYSGLSVVPPEALYSKPANLSRVNQKLFPVIWPGNTDQRPRGWVFPNNGRLLKIGVPKAVIYPEFVSQIKGTDMFQGFCIDVFLAAVNLLPYAVPYKFIPYGDGKNNPSATELTRLITTGEFDGAVGDIAITTERTRMVDFTQPYIESGLVVVAPVKRAESNALAFLAPFTPKMWCVTAIFFILVGAVVWILEHRVNDEFRGPPKKQVVTVLWFSFSTMFFSHRENTVSTLGRFVLIIWLFVVLIVNSSYTASLTSILTVQQLYSPIKGIESLVNGKEPIGYTQGSFARNYLVQEIGIDESRLVPLTTAEEAAKALRNGPQNGGVAAYIDELAYIDIFLSTRCDLTVVGREFTRNGWGFAFPRDSPLSVDLSTAILQMIDNGDLQRIHDKWLLSIACLSQGAKFEVERLQLKSFWGLYMICGLACLLALFIYFIQIWRQYRKHYSEELESSDGQSLGSSRSVRLKTFLSFVDEKEETIKSVSKRRKMERISYRSSEGGSSINSNKGYASRRSECGTEV 938
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2149 938 PANTHER GLUTAMATE RECEPTOR 3.6 12 925 - -
Ssu2g2149 938 Gene3D - 148 425 - -
Ssu2g2149 938 Gene3D - 583 709 - -
Ssu2g2149 938 SUPERFAMILY Periplasmic binding protein-like I 27 464 IPR028082 -
Ssu2g2149 938 MobiDBLite consensus disorder prediction 913 930 - -
Ssu2g2149 938 Pfam Ligand-gated ion channel 813 845 IPR001320 GO:0015276|GO:0016020
Ssu2g2149 938 SUPERFAMILY Periplasmic binding protein-like II 448 813 - -
Ssu2g2149 938 PANTHER IONOTROPIC GLUTAMATE RECEPTOR 12 925 - -
Ssu2g2149 938 CDD PBP1_GABAb_receptor_plant 33 429 IPR044440 -
Ssu2g2149 938 Pfam Receptor family ligand binding region 50 410 IPR001828 -
Ssu2g2149 938 Gene3D - 473 582 - -
Ssu2g2149 938 SMART GluR_14 473 814 IPR001320 GO:0015276|GO:0016020
Ssu2g2149 938 CDD GluR_Plant 472 812 - -
Ssu2g2149 938 Gene3D - 50 400 - -
Ssu2g2149 938 PIRSF IGluLR_plant 1 936 IPR017103 -
Ssu2g2149 938 Pfam Bacterial extracellular solute-binding proteins, family 3 494 812 IPR001638 -
Ssu2g2149 938 MobiDBLite consensus disorder prediction 905 938 - -
Ssu2g2149 938 Gene3D - 759 818 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2149 Ssu-Chr2 77428101 77432518 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2149 5 915 Ion Channels AT3G51480 57.895 0.0 1102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2149 K05387 - gmx:100793320 1650.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2149 2 77428101 77432518 Ssu2g2149 2 77428101 77432518 ECH