Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2148 ATGTATTTGGTGGACAGTGTTTCTGGAAGGGTCATTTGGTCTTTTTCAACTGGATCCCCAATCTACCATTCCTATCACGCGCCCGTCAATAACCCTAAGGAGAACGTTACCGGCCTCATTGAATGCGGAGATGACTGGGAATTAATCGTTCACGACACTCACTTTGGTAAAACGAGACTCTCTGAATCAGTTGCGGATTATGTTGCTTTTACCCCAACCGTAACAAAGGATGGAGCAGTTGTACTTGGATCCAAAAGAAGCACTGTGTTTGAAGTAGATGCTAAAACCGGAAGGCTTGTTCGGAGCTACTCGGCTGCGGAATTTGATAATGTTTCAACTGTGGTGTCGAGTGACGATGGGCAGCGGGTTACAACTGTCTTCAGTACAAAGAATAATGAGCTTGCTGATCCTGCGCAGCTGAATTCACCAGAGCTCTTGCTCAAGATAATCAGGACAGATTATTTTTTGCAATCTGTTGGTCCCGGGTCAGGGATAGTTTTATGGACTATGGCTGTGGCTGAATTTAAGGGCGTGTTGATTTGCCAACATAATGAGAATCCATCTGACAGGGTGTTGTTTGATGTTGAGGATGGGTATGTTTCTGATGGTGGCTTGGATTTTGCCATGCCGTATGCATGTTGGGACAGAAAACTGAAAGAAGTCTACCGCCAACGCAAGAGTTTTCTGTTGGAACCGGTTGACCCTGAGAGATTGTCTGGGACTTCTCAAGAGCTGATGCTTCCACTAGAACATGATGTTGATAGATTTGTCCCTGGTCAGGATGGTAATATGATGCTACCTTTGCCCATGCCAAATTCTTTGCCCTCTTTGCAGTCAAAGATTGGCTTCTATGAGAGCAATGATAATGCAGCTGTGCTCCCTCAACCTCTTTTGGAGATCACTGCACCAGAGGAAGTTGATCCAAACAGGGCATGGTCAACTACATTACCTCTTGTGTTGTTTACAGTCTTTCTTGGCTTTTTTATCTTCTACCACTCTCTAGTGGTTAAGAACAAAGTTGTATTGAAGGACCAAAAGAGCAACtcagatttaaaaagtttacctcccaagaagaagaaagcacGCAAGTCAGGAAAGAACAATATCATTGTTGACAAACAGGATAAACATCTGTCATTGGCTGAGGGGGATTTACTGACACATAAGGAAACTGAAACATGGTTGCACTTTGATAAAGTTGATGGACGCAGGATCGGTAAActatttgtatcaaataaagaaattgcTAAGGGAAGCAATGGTACCATTGTTCTTGAGGGGACATATGAAGGCCGAACAGTTGCTGTCAAACGTCTTGTCCAGGCTTATCATGATGTAGCACATAAAGAAATCCAAAATCTCATTGCATCCGACAGGCATCCAAATATTGTCCGATGGTATGGGGTGGAATATGATAATGATTTTGTTTACCTTGCTCTGGAGCGTTGTACATGCAACTTGGATGATTTGATTCATACTTACTCTGATATATCAGAGAACCCAACATTTAGCAAGGACCAATATTccaatttgttaaaaaatgttcaGATGGAGACAGAGAGGAATGATATGCAATATCTTTGGAAAGCAAATGGCTTTCCATCGCCTCTATTACTGAAATTGATGAGGGATGTAGTTTCTGGACTTGTTCATTTGCATGAACTAGGAATAATACATCGGGATTTGAAACCccaaaatgttttgataataaaagaaagatcatTATGTGCAAAGCTTTCTGATATGGGAATTAGCAAACGTCTTCTTGAAGATATGTCTTCTTTGGGTCATAGTGCTACTGGCGGCTGTGGCAGTTCAGGTTGGCAAGCACCAGAGCAGCTTGTTCAAGGACGCCAAACACGAGCTGTGGATTTATTTAGTTTAGGTTGTGTCCTCTTTTTCTGCATGACTGCGGGAAGACATCCATTTGGAGAACGTCTTGAACGTGATGTCAATattgtgaaaaatcaaaaggaTCTTTTCTTAGTGGAGTTCATTCCTGAAGCTGAAGATCTTATTTCTTGTTTGTTAAACCCTAACCCTGATCTAAGGCCAAAGGCAATTGAAGTATTGCACCATCCTCTTTTTTGGAGCTCTGAGATGAGACTTTCATTTCTCCGTGACACAAGTGACAGGGTGGAACTTGAAGATAGAGAAACTGATTCTGATCTTTTGAAGGCACTAGAAAGCATTGCTCCTCTGGCTTTAGGTGCAAAATGGGATGAAAAGCTGGATCCTGCTTTCCTTACTAACATTGGTCGTTACAGGAGATATAAATTTGACAGTGTTCGAGACATGTTGAGGGTCATGAGAAACAAGCTAAATCACTATAGAGAATTGCCTCAAGAAATCCAGGAACTGGTAGGACCTGTTCCGGAAGGATTCAATGACTACTTTGCAAGTCGATTCCCGAGGCTGTTGATTGAAGTGTACAAAgttatttgcaaaaattgcaagGACGATGAATGTTTTCAAAGATATTTTAGAGACATTAATTAG 2499 0.3982 MYLVDSVSGRVIWSFSTGSPIYHSYHAPVNNPKENVTGLIECGDDWELIVHDTHFGKTRLSESVADYVAFTPTVTKDGAVVLGSKRSTVFEVDAKTGRLVRSYSAAEFDNVSTVVSSDDGQRVTTVFSTKNNELADPAQLNSPELLLKIIRTDYFLQSVGPGSGIVLWTMAVAEFKGVLICQHNENPSDRVLFDVEDGYVSDGGLDFAMPYACWDRKLKEVYRQRKSFLLEPVDPERLSGTSQELMLPLEHDVDRFVPGQDGNMMLPLPMPNSLPSLQSKIGFYESNDNAAVLPQPLLEITAPEEVDPNRAWSTTLPLVLFTVFLGFFIFYHSLVVKNKVVLKDQKSNSDLKSLPPKKKKARKSGKNNIIVDKQDKHLSLAEGDLLTHKETETWLHFDKVDGRRIGKLFVSNKEIAKGSNGTIVLEGTYEGRTVAVKRLVQAYHDVAHKEIQNLIASDRHPNIVRWYGVEYDNDFVYLALERCTCNLDDLIHTYSDISENPTFSKDQYSNLLKNVQMETERNDMQYLWKANGFPSPLLLKLMRDVVSGLVHLHELGIIHRDLKPQNVLIIKERSLCAKLSDMGISKRLLEDMSSLGHSATGGCGSSGWQAPEQLVQGRQTRAVDLFSLGCVLFFCMTAGRHPFGERLERDVNIVKNQKDLFLVEFIPEAEDLISCLLNPNPDLRPKAIEVLHHPLFWSSEMRLSFLRDTSDRVELEDRETDSDLLKALESIAPLALGAKWDEKLDPAFLTNIGRYRRYKFDSVRDMLRVMRNKLNHYRELPQEIQELVGPVPEGFNDYFASRFPRLLIEVYKVICKNCKDDECFQRYFRDIN 832
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2148 832 SUPERFAMILY Quinoprotein alcohol dehydrogenase-like 4 131 IPR011047 -
Ssu2g2148 832 Gene3D KEN domain 699 832 IPR038357 -
Ssu2g2148 832 SMART serkin_6 409 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2148 832 ProSiteProfiles KEN domain profile. 699 830 IPR010513 GO:0004540|GO:0006397
Ssu2g2148 832 CDD RNase_Ire1 700 828 - -
Ssu2g2148 832 ProSitePatterns Serine/Threonine protein kinases active-site signature. 557 569 IPR008271 GO:0004672|GO:0006468
Ssu2g2148 832 Gene3D - 1 232 IPR015943 GO:0005515
Ssu2g2148 832 Gene3D Transferase(Phosphotransferase) domain 1 514 698 - -
Ssu2g2148 832 SUPERFAMILY Protein kinase-like (PK-like) 393 709 IPR011009 -
Ssu2g2148 832 Gene3D Phosphorylase Kinase; domain 1 398 481 - -
Ssu2g2148 832 SMART PGNneu 761 815 - -
Ssu2g2148 832 Pfam Protein kinase domain 411 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2148 832 Pfam Ribonuclease 2-5A 702 828 IPR010513 GO:0004540|GO:0006397
Ssu2g2148 832 ProSiteProfiles Protein kinase domain profile. 409 696 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2148 832 PANTHER IRE1-RELATED 3 828 IPR045133 GO:0004521|GO:0004674|GO:0030968
Ssu2g2148 832 PANTHER SERINE/THREONINE KINASE DOMAIN PROTEIN 3 828 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2148 Ssu-Chr2 77419934 77426014 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2148 433 695 MAP Kinase Kinase Kinase AT3G06030 26.592 1.38e-19 92.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK IRE1 Ssu2g2148 Pkinase 1.8e-38 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2148 K08852 - gmx:100785363 1264.21
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2148 2 77419934 77426014 Ssu2g2148 2 77419934 77426014 ECH
Ssu2g2148 2 77419934 77426014 Ssu5g0816 5 21106667 21109570 ECH
Ssu2g2148 2 77419934 77426014 Ssu5g0816 5 21106667 21109570 PCT