Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2144 ATGACGCGCATGCTCAGAATTCTCAAGTCCGCGGACAACGCCACCGCCGCGGCCGCGGCGGCTCCGCCGCCGGAGGCGGTGGCCCTGGAGTCAGACTTCGTGGTGATTCTCGCGGCTCTTCTGTGCGCCCTGATCTGCGTTGTCGGACTCGTCGCCGTCGCGCGGTGCGCGTGGCTCCGGCGAGGCACCGGCGCCGGAACCTCCCCCCGGCAGGCCCAGGCGAACAAGGGGCTGAAGAAGAAGGTGCTGCAGTCGCTGCCGAAATTCGCCTACGTGGACAGCAACCCGAGCAAGTGGTTGGCGACGTCGGAATGCGCGATTTGCCTGGCGGAGTTCGCCGCCGGCGACGAGATCCGCGTGCTGCCACAGTGCGGGCACGGCTTCCACGTGACATGCATCGACACGTGGCTCGGGTCCCACTCCTCGTGCCCTTCCTGTCGGCAGGTTCTCGCGGTGGCCAGGTGCCAGAAGTGCGGCCGCTTccccgccgccgccgccgccggaACCTCCAGAACGGCGGTTACCGAACCCGAATTGAAGTCCAGAGAAGACGACAATGTAGCTGCTAACAGTATtaccaataataacaacaacaatcgCAACAATAGCGGCGGTTTTAGTGGTAACGTTAGTGACATGGAACATAATCATAGCCATCATGTGAACAGTGGGTTCTTGCCCTGA 684 0.5877 MTRMLRILKSADNATAAAAAAPPPEAVALESDFVVILAALLCALICVVGLVAVARCAWLRRGTGAGTSPRQAQANKGLKKKVLQSLPKFAYVDSNPSKWLATSECAICLAEFAAGDEIRVLPQCGHGFHVTCIDTWLGSHSSCPSCRQVLAVARCQKCGRFPAAAAAGTSRTAVTEPELKSREDDNVAANSITNNNNNNRNNSGGFSGNVSDMEHNHSHHVNSGFLP 227
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2144 227 PANTHER ANAPHASE-PROMOTING COMPLEX SUBUNIT 11 RING-H2 FINGER PROTEIN 1 189 - -
Ssu2g2144 227 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Ssu2g2144 227 CDD RING-H2_PA-TM-RING 104 147 - -
Ssu2g2144 227 MobiDBLite consensus disorder prediction 186 212 - -
Ssu2g2144 227 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 66 152 IPR013083 -
Ssu2g2144 227 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 1 189 - -
Ssu2g2144 227 Pfam Ring finger domain 104 147 IPR001841 -
Ssu2g2144 227 SMART ring_2 105 146 IPR001841 -
Ssu2g2144 227 SMART FANCL_C_2 101 155 - -
Ssu2g2144 227 MobiDBLite consensus disorder prediction 169 227 - -
Ssu2g2144 227 SUPERFAMILY RING/U-box 83 152 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2144 Ssu-Chr2 77351152 77351835 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2144 1 187 C3H Transcription Factor Family AT1G76410 56.853 2.37e-65 199
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2144 - - gmx:100787383 338.576
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2144 2 77351152 77351835 Ssu2g2144 2 77351152 77351835 ECH
Ssu2g2144 2 77351152 77351835 Ssu1g2592 1 70847609 70848295 ECH
Ssu2g2144 2 77351152 77351835 Ssu5g0820 5 21235851 21236462 PCT