Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2142 ATGGTCATGGAGAGAAGAATCTGCGAGGAATTAACGCCCAGGTATTATGCCCTTTGTGCCATTGGAGGAATGCTTAGTGCTGGCACCACCCACCTTGCCATCACTCCTCTTGATGTCTTGAAAGTCAACATGCAGGTGCACCCAATTAAGTATTACAGTATTTCCTCTTGCTTTACTACCTTATTGAGGGAACAAGGGCCTTCTGTCCTTTGGAAAGGTTGGACCGGCAAGTTCTTTGGCTATGGTGCTCAAGGAGGGTGCAGATTTGGTCTCTATGAGTATTTTAAAGGGGTTTATTCCAATGTATTGGTAGACCAGAACAggaattttgttttctttcttagtAGTGCGTCTGCTGAAGTGTTTGCCAATGTAGCTCTATGTCCATTTGAAGCTGTTAAAGTCAGGGTTCAAGCACAACACTGTTTTGCTAAGGGCTTGTTTGATGGCTTTCCAAAGTTATATGCATCAGAAGGCACACGAGgATTCTACCGTGGACTAATCCCACTTTTGGGTCGAAACATTCCATTTTCCATGGTTATGTTCTCAACATTCGAGCATTCCGTTGATTTTTTGTATCGAAATGtggtcaaaagaaaaaaggaggacTGTTCAATAGGTCAACAACTTGGTGTGACATGTTTAGCTGGATATGCAGCTGGATCTGTTGGTAGCTTCATTTCTAATCCTGCCGACAATATTGTATCTTCTCTTTATAACAAAAAGGCTGATAGTCTTGCGctgGCTATCAGACATATTGGGCTAGCCAATCTATTTACCAGGAGCCTTCCCATCAGAATGTTGCTGGTTGGTCCTTCTATAACTTTGCAATGGTTTTTTTATGACACCATCAAGATTCTAGGTGGAATGCCAACCAGCGGTGAAGTTACAACTGACATGAGAATAGATGGGGCAGGCTAG 921 0.4083 MVMERRICEELTPRYYALCAIGGMLSAGTTHLAITPLDVLKVNMQVHPIKYYSISSCFTTLLREQGPSVLWKGWTGKFFGYGAQGGCRFGLYEYFKGVYSNVLVDQNRNFVFFLSSASAEVFANVALCPFEAVKVRVQAQHCFAKGLFDGFPKLYASEGTRGFYRGLIPLLGRNIPFSMVMFSTFEHSVDFLYRNVVKRKKEDCSIGQQLGVTCLAGYAAGSVGSFISNPADNIVSSLYNKKADSLALAIRHIGLANLFTRSLPIRMLLVGPSITLQWFFYDTIKILGGMPTSGEVTTDMRIDGAG 306
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2142 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 107 191 IPR018108 -
Ssu2g2142 306 PANTHER PHOSPHATE CARRIER PROTEIN 4 303 - -
Ssu2g2142 306 Pfam Mitochondrial carrier protein 110 195 IPR018108 -
Ssu2g2142 306 Pfam Mitochondrial carrier protein 19 100 IPR018108 -
Ssu2g2142 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 14 98 IPR018108 -
Ssu2g2142 306 ProSiteProfiles Solute carrier (Solcar) repeat profile. 208 287 IPR018108 -
Ssu2g2142 306 Gene3D Mitochondrial carrier domain 17 288 IPR023395 -
Ssu2g2142 306 PANTHER SOLUTE CARRIER FAMILY 25 (MITOCHONDRIAL CARRIER PHOSPHATE CARRIER), MEMBER 3, LIKE-RELATED-RELATED 4 303 IPR044677 GO:0005315|GO:1990547
Ssu2g2142 306 SUPERFAMILY Mitochondrial carrier 15 283 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2142 Ssu-Chr2 77304079 77307720 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2142 3 296 Chloroplast and Mitochondria Gene Families AT2G17270 66.780 5.69e-152 426
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2142 K15102 - gmx:100788561 593.578
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2142 2 77304079 77307720 Ssu2g2142 2 77304079 77307720 ECH