Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2136 ATGAGTGATGCAAAAGAAAACGAGGAAGCTGGCCAGGTTGTGCCCTTGGTCGTGGAAGAAAACCAACAGTTGGTTGATGCAAAGGTTCAAGTTCAACCTGAGGCCGCCTCTGCTCCTGTTCCGGTAGAGGACACTTCAAATCATGTTGAAAGTGGGTCAAATGATGTTCAAAATACGAAGAAGGAGCCACCTGCCGAGGAAAAAAATGTGGAACTCGAGGCTGTTTCAGAAGGAATTCCACAGGGGGATGTTCAAAATACTCTTCACTCTGTCCCAGTAGAGGCTGATGCTCAGATTTTGGATAGGACTGGGTGTGGAGAAGCTTCTGGTGCGAAGGTGGAAGCTGAAGAATGTCCCCAGAGTAATAAGGACGTTGAGAATGATGACAATGTTCATCAAAATAGTATTGGTGATGCTGAAACAGCTGTGGAAATGAAGCCTGAAGCCTGTGGAGTGGCTGATAGTAAAACTTGTGATAAGAGTGATCCCATGCCTGCAAGTCATAATGGGCTTGCTATGCCAAAACCTGCTCCTGCTGATATGAACGCAGAAATTATGAATGTTTTAGAAGTTGAGAATAAGGATGATGCAAAGCAAGCTACTGAACCTGCAGATAATGGGAATTCAAATTCAAAGCACATGTTTTTCTTGGATGCTGACCATTCCTATGATGGTAATGAGTCAGGAACAGAGGAGGAGCAGTCAGCATTTATGAAGGAGCTTGAAAACTTCTTTAGGGAGAGGAGCATGGAATTTAAACCTCCCAAGTTTTATGGAGAAGGACTAAATTGCCTTAAGCTGTGGAGAGCTGTAACGAGATTGGGTGGCTATGATAagGTGACTTCCTGTAAGTTATGGCGGCAAGTGGGAGAGTCTTTCAAGCCTCCGAAGACATGCACCACTGTCTCATGGACTTTTCGGGGATTTTATGAGAAGGCACTTCTTGATTATGaaagacataaaataaaaggtggTGAGCTGAATGTGCCTATTGCTTCTCATCCAGAgcctataaatattgaaaatcagGCTTCAGCATCAGGTAGAGCCCGGAGAGATGCTGCAGCACGAGCTATGCAGGGTTGGCACTCACAACGTCTCCTAGGCAATGGTGAAGTTAGTGACCCTATTATTAAGgATAGGAATGCTGTGTCTGTGCAAAAGCGTGAAAAGCAGCTTAAAAGCATCAATTTAGCCAAACGTAAGAAATCATCTTCATCTTACATGGATAATGCAGTCAAAGCTGCACGCAGTAAACCATCTAAACCACAATTGGACACAACTGTGATTGATATTGGACCTCCTGCTGATTGGGTAAAAGTCAATGTACAAAAAACTAAAGATTGTTTTGAGGTATATGCTTTGGTTCCTGGCCTTCTGCGGGAAGAGGTCCGTGTACAGTCAGACCCAGCAGGACGCCTAGTCATAAGTGGTGAGCCTGAGCATCCCAACAATCCTTGGGGTGTAACACCTTTCAAaaagGTTGTCAGCTTGCCCTCAAGAATTGATCCTCATCAGACGTCCGCGGTAGTGACGCTGCACGGGCAGTTGTTTGTTCGTGTCCCATTTGAACAATCAGAATAG 1584 0.4369 MSDAKENEEAGQVVPLVVEENQQLVDAKVQVQPEAASAPVPVEDTSNHVESGSNDVQNTKKEPPAEEKNVELEAVSEGIPQGDVQNTLHSVPVEADAQILDRTGCGEASGAKVEAEECPQSNKDVENDDNVHQNSIGDAETAVEMKPEACGVADSKTCDKSDPMPASHNGLAMPKPAPADMNAEIMNVLEVENKDDAKQATEPADNGNSNSKHMFFLDADHSYDGNESGTEEEQSAFMKELENFFRERSMEFKPPKFYGEGLNCLKLWRAVTRLGGYDKVTSCKLWRQVGESFKPPKTCTTVSWTFRGFYEKALLDYERHKIKGGELNVPIASHPEPINIENQASASGRARRDAAARAMQGWHSQRLLGNGEVSDPIIKDRNAVSVQKREKQLKSINLAKRKKSSSSYMDNAVKAARSKPSKPQLDTTVIDIGPPADWVKVNVQKTKDCFEVYALVPGLLREEVRVQSDPAGRLVISGEPEHPNNPWGVTPFKKVVSLPSRIDPHQTSAVVTLHGQLFVRVPFEQSE 527
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2136 527 MobiDBLite consensus disorder prediction 117 131 - -
Ssu2g2136 527 CDD ACD_sHsps-like 442 522 - -
Ssu2g2136 527 MobiDBLite consensus disorder prediction 32 70 - -
Ssu2g2136 527 Pfam Hsp20/alpha crystallin family 444 526 IPR002068 -
Ssu2g2136 527 Pfam ARID/BRIGHT DNA binding domain 234 318 IPR001606 GO:0003677
Ssu2g2136 527 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 6-LIKE 19 526 - -
Ssu2g2136 527 ProSiteProfiles ARID domain profile. 231 322 IPR001606 GO:0003677
Ssu2g2136 527 SMART bright_3 232 323 IPR001606 GO:0003677
Ssu2g2136 527 CDD ARID 233 318 - -
Ssu2g2136 527 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN ARID DOMAIN- CONTAINING PROTEIN DEAD RINGER PROTEIN B-CELL REGULATOR OF IGH TRANSCRIPTION BRIGHT 19 526 IPR045147 GO:0006357
Ssu2g2136 527 SUPERFAMILY ARID-like 226 334 IPR036431 GO:0003677
Ssu2g2136 527 MobiDBLite consensus disorder prediction 44 59 - -
Ssu2g2136 527 Gene3D - 425 527 IPR008978 -
Ssu2g2136 527 SUPERFAMILY HSP20-like chaperones 436 523 IPR008978 -
Ssu2g2136 527 SMART ARID_2 228 318 - -
Ssu2g2136 527 MobiDBLite consensus disorder prediction 108 131 - -
Ssu2g2136 527 Gene3D - 231 328 IPR036431 GO:0003677
Ssu2g2136 527 ProSiteProfiles Small heat shock protein (sHSP) domain profile. 427 527 IPR002068 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2136 Ssu-Chr2 77131919 77138241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2136 215 525 ARID Transcription Factor Family AT1G76510 62.658 4.90e-131 386
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR ARID Ssu2g2136 HSP20 1.5e-05 CL0190
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2136 - - gmx:100791081 929.472
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2136 2 77131919 77138241 Ssu2g2136 2 77131919 77138241 ECH
Ssu2g2136 2 77131919 77138241 Ssu5g0843 5 21896371 21918799 PCT