Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2134 ATGGAGTTTGAGCCTTTGAGTCTAAGCAACGAggttgttgaatttgatatgattGGTTTGGGGGATGATGCTGCCGTTGACATGGAACACCCTGTTGAAGGTGATGAGGACcttgttaatattgataatagtCCTGCTGCTGCTACAGCTACTGCTATTACTGTTCTAGCTGCTGGTGTGGGACCTCACATTGCTGGAGGGGACACTAACCTTGAACCTTATCAAGGTATGGAATTTGAATCCGAAGAGGCTGCAAAGGCCTTTTATAATTCCTATGCTCGCCGTGTTGGCTTTAGTACGCGGGTGAGCATGTCCCGACGCTCCAGGCGCGATGGTTCTATAATTCAGAGATCTTTTGTGTGTGCCAAGGAAGGTTTTCGTGTGGAGAAGGAGAAGCATTCGGTTGATGGCAGAGTCAAGCGGCCTCGTGCTGAAACCCGTGTCGGTTGCAAGGCCATGTTGGTTGTGAAAATTCAAGATTCTGGCAGATGGGTTGTTTCTTCCTTTGTCAAGGAACATAACCATGAATTGGTTCCGCCTGACAAGGTGCATTGCCTTCGTTCTCACCGCCATGTTTCAGGTCCAGCTAAGTCGTTGATTGATACTTTGCAGGGTGCCGGAATAGGGCCTAGTGGAATAATGTCTGCACTAATAAAGGAATATGGGGGAATTAGCAATATTGGTTTCACTGAGCGTGACTGTAGGAATTATATGAGGAGCAGTAGGCAAAGGACCCTTGGAGGTGACACTCAAATCCTTTTGGATTACTTGAAGAGCAAACAAGCAGAGAATCCTTCATTTTTCTATGCTGTACAAGGTGATGAAGATCATTGCATGAGTAATATCTTCTGGGTTGATCCCAAGGCCAGGACTAACTACACTTACTTTGGTGACACTGTCACCTTTGACACAACATATAGGTCAAACCGCTATAGATTGCCCTTTGCACCTTTTACTGGCGTAAATCATCATGGACAGCCTGTATTATTTGGGTGTGCTCTTCTGATAAATGAATCAGAGCCATCTTTTGTATGGCTGTTCAAAACCTGGCTTGAAGCAATGTCGGGCCAACCTCCAGTTTCAATTACTACTGATCATGATAGGGTGATTCGTGCAGCCATCAACCATGTCTTTCCTGGTACCCGTCACCGATTTTGCAAATGGCACATTTTTAAAGAGTGCCAAGAGAAGTTGTCTCATGTGCTTTCTGAACATCATAATTTTGAAGCTGACCTCCATAAATGTGTTAACCTGACAGAGTCCATTGAGGAGTTTGAGTCTTGTTGGTCCTCCCTAATTGATGGGTATGATCTCAAGGAACATGAATGGCTCCAAGCAATTTATAGTGATAGGCGGCAGTGGGTACCACTGTACATGAGGGACACATTTTTTGCAGAAATGTCAATAACACAGCAAAGTGATAGcataaactcttattttgatGGATATGTCAATGCATCCACAACACTTCAGCTTTTTGTCAAGCAGTATGAGAAGGCTCTGGAGAGCCGTTATGAAAAAGAAGTCAAAGCtgattatgacacaattaacACTACTCCAGTTCTGAAGACTCCCTCACCTATGGAGAAACAGGCAGCAGGAGTTTACACAAGGAGATTGTTTATCAAATTTCAAGAAGAGTTGGTTGAGACATTAACTTTCTTGGCAAATAAAgtagatgaagaagaaatgatTACTTTGTATAGAGTAGCCAAATATGGGGAAATTCACAATGCCTACTTTGTCAGATTTAACTCTTTTGAGATGAAAGCTACTTGTAGCTGCCAGATGTTTGAGTTTTCTGGTCTAGTTTGTAGACATATATTGACTGTTTTTAGGGTGACAAATCTTCTTACTTTACCatctcattatattttaaaaagatggaGCAGGATTGCTAAAAGTGGTGTCATATTGGATGAATGTACTACTAATTTCTCAAATTGTGCCCAAGAATCTCTAACTATCCGATACAATAATCTTCGTCATGAGGCCCTTAAGTATGTTGACGAGGGAGTAACCTCTCTGAAAGTTTATGATGTGGCAATGAGTGCTCTTCAGGAGGCTGCAAATAAAGTGGCACTTGCAACAAAAAATGGTGGAAGACAGGATATTTTAAATGGCACTTGTGAAGAAGACCTTCATCAGAGCAATGAGGCAACTACAAGTCACAGTGATCCTCCATTTGGTTCACAACAATCTTCATATAAGGATGACCAAGATAGAACAATTGAGAAGTTGACACGGCAACTTGACAGAGCTCGAAGGAAGTGTGAAGTTTATAGGTCCAACTTGCtgtcaattttaaaagatattgaaGAGCAGAAGCTACAGCTATCAGTTAAAGTCCAAAATATTAAGTTAGGAATGAAAGATTGA 2379 0.4023 MEFEPLSLSNEVVEFDMIGLGDDAAVDMEHPVEGDEDLVNIDNSPAAATATAITVLAAGVGPHIAGGDTNLEPYQGMEFESEEAAKAFYNSYARRVGFSTRVSMSRRSRRDGSIIQRSFVCAKEGFRVEKEKHSVDGRVKRPRAETRVGCKAMLVVKIQDSGRWVVSSFVKEHNHELVPPDKVHCLRSHRHVSGPAKSLIDTLQGAGIGPSGIMSALIKEYGGISNIGFTERDCRNYMRSSRQRTLGGDTQILLDYLKSKQAENPSFFYAVQGDEDHCMSNIFWVDPKARTNYTYFGDTVTFDTTYRSNRYRLPFAPFTGVNHHGQPVLFGCALLINESEPSFVWLFKTWLEAMSGQPPVSITTDHDRVIRAAINHVFPGTRHRFCKWHIFKECQEKLSHVLSEHHNFEADLHKCVNLTESIEEFESCWSSLIDGYDLKEHEWLQAIYSDRRQWVPLYMRDTFFAEMSITQQSDSINSYFDGYVNASTTLQLFVKQYEKALESRYEKEVKADYDTINTTPVLKTPSPMEKQAAGVYTRRLFIKFQEELVETLTFLANKVDEEEMITLYRVAKYGEIHNAYFVRFNSFEMKATCSCQMFEFSGLVCRHILTVFRVTNLLTLPSHYILKRWSRIAKSGVILDECTTNFSNCAQESLTIRYNNLRHEALKYVDEGVTSLKVYDVAMSALQEAANKVALATKNGGRQDILNGTCEEDLHQSNEATTSHSDPPFGSQQSSYKDDQDRTIEKLTRQLDRARRKCEVYRSNLLSILKDIEEQKLQLSVKVQNIKLGMKD 792
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2134 792 MobiDBLite consensus disorder prediction 715 737 - -
Ssu2g2134 792 Pfam FAR1 DNA-binding domain 88 179 IPR004330 -
Ssu2g2134 792 PANTHER PROTEIN FAR1-RELATED SEQUENCE 5-LIKE 46 766 - -
Ssu2g2134 792 MobiDBLite consensus disorder prediction 715 742 - -
Ssu2g2134 792 SMART 26again6 591 618 IPR006564 GO:0008270
Ssu2g2134 792 Pfam MULE transposase domain 300 392 IPR018289 -
Ssu2g2134 792 Pfam SWIM zinc finger 588 614 IPR007527 GO:0008270
Ssu2g2134 792 Coils Coil 737 764 - -
Ssu2g2134 792 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 46 766 IPR031052 GO:0006355
Ssu2g2134 792 ProSiteProfiles Zinc finger SWIM-type profile. 580 616 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2134 Ssu-Chr2 77080825 77084907 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Ssu2g2134 MULE 5.6e-29 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2134 - - gmx:100782414 1459.89