Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2130 ATGTTCCCCCTCCAATGCACGGCTGGTTGCTCCGCCGTGATCGCCGCCGTCACCACTATTCTCCTCCTGTTCCCGGCGGCGAGTTCCCAGGCCCAGATTCTGAAAACGGAGACCTACGTCTTCGGTCCCTTCAACCAGTCCTACTACGACACCTTCGATGTGGTGCCCTCCGCCGCCATCAACCTCGACTCCCTCCAAGTAACTCCGGACAGCACCGGCAACGTGTCCCTCGCCGACCGCTCCGGCAGAGTCTTCTTCAGCAAGCCCTTCAAGCTCTGGGACGACGACGATGACTTCAACGGCAAACTCGCCTCCTTCAACACCTCCTTCCTCGTCAACGTTTACCGTCCCAAAAACAACGACACTCCCGGCGAGGGCATCGCCTTCCTCATCGCGCCTTCGCCGCTTACCATCCCTCTCAACAGCTCCGGCGAGTTCCTCGGCCTCACCAACGCCTCCACCGACGGCAACAGCACCAACCGAATCGTCGCCGTCGAGCTTGACACCGTCAAGCAGGACTTCGACCCCGACGACAACCACATCGGGCTCGACATCAACGGCGTTAGGTCCAACCTCACCGTCTCCCTTTCCCCCTTGGGCTTCGAGATCGCGCCCAACGGCACGCGCTTCCACGTGCTGTGGGTGGAGTATGACGGTGACCGGAAGGTGATTGACGTGTACATCGCGGAGCAGAGCGACAAGGACGCTCCTACAGTGGCGAAACCGGCTGAGCCGGTTTTGAGTTTGGGTCTCGATCTTAAACGGGTTTTGAATCAGGTTTCTTATTTCGGGTTCTCTGCTTCAACCGGTGACAACGTGGAGCTGAACTGCGTGCTGAGGTGGAACATATCGATCGAGGTGTTCCCCGAAAAGAGCGGAAGTGGAAATGCGTTGAAGATTGGGTTGGGTGTTGGGGTGCCGTTGGTGATTCTTATTGTGGCGGGTGTTGTTGGGTGGGTTTACTGGTTGCGAAGGAAGAATAGGGATAGTGAGACTCAGATTTTGGGGACGCTGAAGAGTTTGCCTGGAACACCGAGAGAGTTTAGGTTTCAGGAGCTGAAGAAGGCGACCAATAATTTCGATGAGAAGCATAAGCTTGGACAGGGTGGATACGGCGTCGTTTATAGAGGGACGCTGCCGAAGGAGAAGTGGGAAGTGGCGGTTAAGATGTTCTCTAGAGATAAGATGAAAAGCGCTGATGATTTCCTCGCTGAACTCACCATTATCAATCGGCTTCGTCACAAAAACCTTGTTCGGTTACTCGGATGGTGTCACAAAAACGGGGTGTTGCTATTAGTGTACGATTACATGCCTAATGGTAGCTTGGACAACCACATTTTTTGTGAGGAAGGGAGCAGCACTACCCCACTAAGTTGGCCTCTAAGGTACAAGATCATATCAGGGGTGGCTTCTGCATTGAATTACCTACACAACGAGTATGATCAGAGAGTGGTCCACAGAGACCTTAAGGCCAGCAACATCATGCTGGACTCGGACTTCAATGCCCGTTTGGGTGACTTTGGCTTGGCTCGCGCATTGGAGAATGGGAAAACATCGTATGCAGAGTTGGAAGGAGTGCATGGCACCATGGGGTACATTGCACCCGAGTGCTTTCACACGGGCAGGGCCACAAGGGAATCAGATGTTTATGGGTTTGGAGCTGTGCTCCTTGAGGTGGTGTGTGGTCAGAGACCATGGACAAAGATTGGGGGCTATGATTGCGTGGTGGATTGGGTATGGCACCTGCATCGTGAGCAAAGGATACTAGATGCAGTGGATCCGAGGCTTGGGAATGACTGTGTGGCTGAAGAGGCAGAGAGGGTTCTGAAATTGGGACTAGCATGCTCTCACCCCGTTGCCAGTGAGAGGCCTAAGATGCAAGCAATTGTTCAGATCATATCTGGCTCAGTGCATGTGCCTCCTGTCCCACCTTTCAAGCCAGCTTTTGTGTGGCCAGCTGTGGATCTAGCAAGCCTTGCGAGTGACCTTACGGCTACTACCACAACTGAGTACACACCCATGAACAGTAACACACATTCTATCCATGTTGAATTCTCTGATAGCAGCTCTCTGGTCTAA 2079 0.5363 MFPLQCTAGCSAVIAAVTTILLLFPAASSQAQILKTETYVFGPFNQSYYDTFDVVPSAAINLDSLQVTPDSTGNVSLADRSGRVFFSKPFKLWDDDDDFNGKLASFNTSFLVNVYRPKNNDTPGEGIAFLIAPSPLTIPLNSSGEFLGLTNASTDGNSTNRIVAVELDTVKQDFDPDDNHIGLDINGVRSNLTVSLSPLGFEIAPNGTRFHVLWVEYDGDRKVIDVYIAEQSDKDAPTVAKPAEPVLSLGLDLKRVLNQVSYFGFSASTGDNVELNCVLRWNISIEVFPEKSGSGNALKIGLGVGVPLVILIVAGVVGWVYWLRRKNRDSETQILGTLKSLPGTPREFRFQELKKATNNFDEKHKLGQGGYGVVYRGTLPKEKWEVAVKMFSRDKMKSADDFLAELTIINRLRHKNLVRLLGWCHKNGVLLLVYDYMPNGSLDNHIFCEEGSSTTPLSWPLRYKIISGVASALNYLHNEYDQRVVHRDLKASNIMLDSDFNARLGDFGLARALENGKTSYAELEGVHGTMGYIAPECFHTGRATRESDVYGFGAVLLEVVCGQRPWTKIGGYDCVVDWVWHLHREQRILDAVDPRLGNDCVAEEAERVLKLGLACSHPVASERPKMQAIVQIISGSVHVPPVPPFKPAFVWPAVDLASLASDLTATTTTEYTPMNSNTHSIHVEFSDSSSLV 692
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2130 692 PANTHER L-TYPE LECTIN-DOMAIN CONTAINING RECEPTOR KINASE S.5-RELATED 17 682 - -
Ssu2g2130 692 ProSitePatterns Serine/Threonine protein kinases active-site signature. 484 496 IPR008271 GO:0004672|GO:0006468
Ssu2g2130 692 Pfam Legume lectin domain 40 287 IPR001220 GO:0030246
Ssu2g2130 692 SMART serkin_6 360 633 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2130 692 CDD lectin_legume_LecRK_Arcelin_ConA 49 282 IPR001220 GO:0030246
Ssu2g2130 692 ProSitePatterns Protein kinases ATP-binding region signature. 366 389 IPR017441 GO:0005524
Ssu2g2130 692 SUPERFAMILY Concanavalin A-like lectins/glucanases 38 288 IPR013320 -
Ssu2g2130 692 SUPERFAMILY Protein kinase-like (PK-like) 342 661 IPR011009 -
Ssu2g2130 692 Gene3D - 37 295 - -
Ssu2g2130 692 PANTHER - 17 682 - -
Ssu2g2130 692 Pfam Protein kinase domain 361 631 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2130 692 Gene3D Phosphorylase Kinase; domain 1 345 436 - -
Ssu2g2130 692 Gene3D Transferase(Phosphotransferase) domain 1 437 638 - -
Ssu2g2130 692 CDD STKc_IRAK 366 633 - -
Ssu2g2130 692 ProSiteProfiles Protein kinase domain profile. 360 649 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2130 692 ProSitePatterns Legume lectins beta-chain signature. 163 169 IPR019825 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2130 Ssu-Chr2 76970303 76973356 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2130 56 645 Receptor kinase-like Gene Family AT3G53810 39.194 1.78e-124 384
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_L-LEC Ssu2g2130 Pkinase 8.1e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2130 - - gmx:100780014 1142.1
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2130 2 76970303 76973356 Ssu2g2130 2 76970303 76973356 ECH