Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2119 ATGGCAGCAGCTTCAGAATCAATGGGAGTATCGGTGGGGGGTGACACGTGGAAGGCCCATGTGGGCATGGCACTGGTGCAGCTATTTTATGGTGGCTACCATGTAATCACCAAAGTGGCACTTAATGTTGGGGTCAACCAACTAGTTTTCTGCTTTTACCGGGATTTCCTTGCCCTCATTATTCTTGCTCCCCTCGCTTTTTTTCTTGAAAGACGGACTAGACCACCCATTACCAAGAAGCTACTGATgtcattcttctttcttggaTTGACTGGAATATTTGGCAACCAGATCTTGTTTCTTATTGGTTTAAGTTATACTAATCCGACTTATGCTGCTGCTGTACAGCCAGTCACTCCAGTCTTTACATTTCTGTTTACTGTAATGATGGGCATAGAAAGAGTGAACTTGCTCAGATATGAAGGTCTGGCAAAGGTTGGAGGAACTCTTATCTGTGTTTTTGGTGCCATATTGATGGTCTTTTATCGTGGTCCAGCTTTGATAAGAGGTAAAGAAATGGAGCAtgttgcacaaattaaaataagtgcCAGAGGTCAGCCAGAGCCTTCTGGATGGTTAATCAATGGTTTACAGGGTCTTGGATTAAACCATTTTCAACTTGGGATTATATTCTTGATAGGGAACTGCAGCTGCATGGCTGCTTTTCTAGCCATTCAGGCaccattattaaaaaagtatcctGCAAATATATCTGTCACAGCGTATTCATTCTTCTTTGGAGCTGTACTGATGGTGATTGCATCATTATTCATGGTTAATGAGTCAACTGACTGGATTTTGAAGCGATCAGAAATACTAGCCGTTGTATATGCTGGAACTATTGCATCTGCCCTTAACTATGGAATCGTTACATGGAGCAATAAGATATTGGGGCCAGCTTTGGTTTCCCTTTACAATCCGCTTCAACCTGCGTGTTCTGCCCTCCTGTCCCAAATTTTCCTTGGCACTCCAATTTACTTGGGAAGCATCCTAGGGGGATCTTTAATTGTTGCCGGTCTATATATAGTTACTTGGGCATCTTATAGAGAAAGACAGGAAACTTTTGGAGTTACTCCTAATGGCTCTTGTGTCTCTGAACCACTTATTCATGATAAAGGAGCATACCAGAGCGGTCACATTTTTTTGGGTTCCTCCAGCGGATCCTTAAATCCAAAGTCATCAGATTAA 1188 0.4066 MAAASESMGVSVGGDTWKAHVGMALVQLFYGGYHVITKVALNVGVNQLVFCFYRDFLALIILAPLAFFLERRTRPPITKKLLMSFFFLGLTGIFGNQILFLIGLSYTNPTYAAAVQPVTPVFTFLFTVMMGIERVNLLRYEGLAKVGGTLICVFGAILMVFYRGPALIRGKEMEHVAQIKISARGQPEPSGWLINGLQGLGLNHFQLGIIFLIGNCSCMAAFLAIQAPLLKKYPANISVTAYSFFFGAVLMVIASLFMVNESTDWILKRSEILAVVYAGTIASALNYGIVTWSNKILGPALVSLYNPLQPACSALLSQIFLGTPIYLGSILGGSLIVAGLYIVTWASYRERQETFGVTPNGSCVSEPLIHDKGAYQSGHIFLGSSSGSLNPKSSD 395
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2119 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 243 349 - -
Ssu2g2119 395 PANTHER NODULIN MTN21/EAMA-LIKE TRANSPORTER FAMILY PROTEIN 18 386 - -
Ssu2g2119 395 PANTHER WAT1-RELATED PROTEIN 18 386 IPR030184 GO:0016021|GO:0022857
Ssu2g2119 395 Pfam EamA-like transporter family 22 160 IPR000620 GO:0016020|GO:0016021
Ssu2g2119 395 Pfam EamA-like transporter family 207 344 IPR000620 GO:0016020|GO:0016021
Ssu2g2119 395 SUPERFAMILY Multidrug resistance efflux transporter EmrE 53 161 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2119 Ssu-Chr2 76786100 76791689 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2119 102 370 Nodulin-like Gene Family AT5G45370 61.172 1.10e-118 344
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2119 - - gmx:100793730 644.425
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2119 2 76786100 76791689 Ssu2g2119 2 76786100 76791689 ECH