Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2117 ATGCCACAGAACTGCATAGCACCGAAACCAGAATACTGCAATAGTCACTCTGTGGAAGGACCCCCAGAGATGACTGAGCCTCATAACTCAACTGTCCTTTCCTATCCCATGCATAccaaagaacaacaacaacctttCCCAAAACTCATTATGTACCCCATAACTCTAAAGTTTAAGGAGTTGGTGTACAAAGTTAAACTAGAGCAGAAAGGAGGGTGCTGGGGCAGTACATGGACTTGCAAGGAGAAGACCATATTGAATGGAATCACTGGTGTGGTATGCCCAGGAGAAATACTAGCTATGTTGGGGCCATCAGGTAGTGGCAAAACCACACTTCTCACGGCACTTGGAGGCCGGCTCAGTGGCAAACTATCCGGTGAGATCACGTACAACGGTCAACCTTTCTCAGGTGCCATGAAAAGAAGAACAGGTTTTGTGGCTCAGGATGATGTGCTATACCCTCATCTAACTGTCACTGAAACTCTAGTGTTCACTGCACTTCTAAGGCTTCCCAACAGCTTGACCCGAGATGAAAAAGTTCAACATGTAGAGAGAGTGATCACTGAGCTAGGCCTGAGTCGTTGCAGGAGCAGCATGATAGGAGGGCCACTTTTTAGAGGAATATCAggtggagagaaaaaaagagtgagCATAGGCCAAGAAATGCTCATCAACCCAAGCCTCCTGTTGCTAGATGAGCCTACTTCAGGCTTAGATTCCACCACAGCACAAAGGATCCTCAACACAATCAAACGCCTAGCTAGTGGGGGTAGAACTGTTGTCACCACTATTCATCAACCCTCTAGTAGGCTCTACTACATGTTCGATAAGGTGGTCTTGCTCTCTGAAGGCCGCCCCATCTATTATGGTCCTGCTTCAACTGCCTTAGACTACTTCTCATCTGTTGGTTTTTCCACATGTGTCACTGTCAATCCAGCTGATCTCTTGCTTGATCTTGCCAACGGGATTGCCCCGGACTCTAAGCATGCAACTGAACAAAGTGAGGGACTGGAACAGGAGAGAAAGCAGGTGAGAGAATCTCTCATCTCTGCTTATGAGAAGAACATAGCTACAAGGCTGAAAGCTGAGGATTGCAGCCTGGAAGTGAACAACTACAATATCACAAAAGATGCTTGTGCAAGAAATTCGATAAAGCCAGAACAATGGTGCACGAGCTGGTGGCATCAGTTCAAAGTACTATTACAAAGGGGAGTGAGGGAGAGAAGGTATGAAGCCTTCAACAGGCTGAGAATATTCCAAGTTGTAAGTGTCGCTTTTCTTGGTGGACTATTGTGGTGGCATACTCCAGAGTCACACATTGAAGATCGGGTTGCcttgctctttttcttttctgttttctgGGGATTCTACCCTCTCTACAATGCAGTTTTCACGTTCCCTCAAGAGAGGAGAATGCTGATCAAGGAACGGTCGTCGGGAATGTACCGCCTTTCTTCATACTTTCTAGCTAGAACAATAGGAGACTTGCCACTGGAGCTTGCACTTCCAACTGCATTTGTCTTCATAATCTATTGGATGGGAGGGCTTAAACCTGATCCTGTGACTTTTATCCTTTCTCTTCTTGTGGTTCTTTACAGTGTTGTTGTCTCTCAAAGCCTTGGCTTAGCATTTGGTGCTATGTTGATGGAGATTAAACAGGCAACTACTCTAGCTTCTGTGACAACCCTTGTATTTCTCATTGCTGGAGGGTACTATATACAACAGATTCCTCCATTCATAGTGTGGCTCAAGTACTTGAGCTACAGCTACTACTGCTACAAGCTGCTTCTAGGTGTCCAGTACAATGAAAATGACTATTATGAATGCTCAAAAGGGGAGCTGTGCAAGGTTGCAGATTTTCCTCCTATCAAATCAATGGGCTTGAATCATTTGTGGGTTGATGTGTGCATTATGGCCCTGATGTTGGTGGGTTATCGACTAGTTGCTTATTTAGCACTGCACAGAGTTAGGTAG 1974 0.4402 MPQNCIAPKPEYCNSHSVEGPPEMTEPHNSTVLSYPMHTKEQQQPFPKLIMYPITLKFKELVYKVKLEQKGGCWGSTWTCKEKTILNGITGVVCPGEILAMLGPSGSGKTTLLTALGGRLSGKLSGEITYNGQPFSGAMKRRTGFVAQDDVLYPHLTVTETLVFTALLRLPNSLTRDEKVQHVERVITELGLSRCRSSMIGGPLFRGISGGEKKRVSIGQEMLINPSLLLLDEPTSGLDSTTAQRILNTIKRLASGGRTVVTTIHQPSSRLYYMFDKVVLLSEGRPIYYGPASTALDYFSSVGFSTCVTVNPADLLLDLANGIAPDSKHATEQSEGLEQERKQVRESLISAYEKNIATRLKAEDCSLEVNNYNITKDACARNSIKPEQWCTSWWHQFKVLLQRGVRERRYEAFNRLRIFQVVSVAFLGGLLWWHTPESHIEDRVALLFFFSVFWGFYPLYNAVFTFPQERRMLIKERSSGMYRLSSYFLARTIGDLPLELALPTAFVFIIYWMGGLKPDPVTFILSLLVVLYSVVVSQSLGLAFGAMLMEIKQATTLASVTTLVFLIAGGYYIQQIPPFIVWLKYLSYSYYCYKLLLGVQYNENDYYECSKGELCKVADFPPIKSMGLNHLWVDVCIMALMLVGYRLVAYLALHRVR 657
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2117 657 Pfam ABC-2 type transporter 396 601 IPR013525 GO:0016020|GO:0140359
Ssu2g2117 657 Gene3D - 75 302 IPR027417 -
Ssu2g2117 657 Coils Coil 327 347 - -
Ssu2g2117 657 SMART AAA_5 95 285 IPR003593 -
Ssu2g2117 657 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 44 655 - -
Ssu2g2117 657 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 78 300 IPR027417 -
Ssu2g2117 657 Pfam ABC-2 type transporter 265 362 IPR043926 GO:0140359
Ssu2g2117 657 CDD ABCG_EPDR 53 290 - -
Ssu2g2117 657 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 56 308 IPR003439 GO:0005524
Ssu2g2117 657 ProSitePatterns ABC transporters family signature. 208 222 IPR017871 GO:0005524
Ssu2g2117 657 PANTHER ABC TRANSPORTER, G1, P-LOOP CONTAINING NUCLEOSIDE TRIPHOSPHATE HYDROLASE-RELATED 44 655 - -
Ssu2g2117 657 Pfam ABC transporter 87 236 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2117 Ssu-Chr2 76730388 76733264 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2117 85 284 Calmodulin-binding Proteins AT2G36910 30.332 1.59e-13 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2117 K05681 - gmx:100780191 1263.44
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2117 2 76730388 76733264 Ssu2g2117 2 76730388 76733264 ECH