LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Ssu2g2106	ATGGAACTAAGCACCATGTTTTGCCTGTGtgcttcttttctcttcattgtTCTGTTTAGGACACTTATCAAACCCTTTGTCTCCAAACGCCGTGACTTGCCACTCCCTCCTGGCTCCATGGGCTGGCCTTACATAGGAGAAACTTTTCAAATGTATTCTCAAGACCCAAATGTCTTCTTtgccacaaaaataaaaagGTATGGCTCTATGTTCAAGTCCCACATTCTAGGATGTCCCTGCGTGATGATTTCCAGCCCCGACGCTGCGAAGTTTGTGCTCAACAAAGCTCAACTGTTCAAGCCAACATTCCCAGCAAGCAAAGAGAGGATGTTGGGAAAACAAGCTATCTTCTTTCACCAAGGAGAGTACCATGCTAACTTGAGGAGGCTTGTTCTTCGCACCTTCATGCCCGAAGCCATCAAAAACATCGTCCCTGACATTGAATCCATCGCCCAAGATTGCCTCAAATCATGGGAAGGCCGTTCAATCACCACTTTCCTTGAAATGAAAACGTTCACCTTCAATGTTGCTCTGCTTTCGATTTTTGGGAAAGAAGAAATTCTGTACAGAGATGCTCTGAAACGGTGCTACTACACTCTGGAGCAAGGGTACAACTCAATGCCCATCAACGTTCTGGGGACACTGTTCCACAAAGCGATGAAGGCAAGGAAGGAGCTTGCACAGATCTTGGCCCAAATAATCTCGAGCAGGAGGCAGAGGAAGCAAGATTACAAGGACTTGTTGGGTTCATTCATGGGTGAGAAAGCAGGGCTCACCGACGAGCAGATAGCAGATAATGTAATTGGCCTCATATTTGCAGCTCGTGACACCACGGCCAGTGTGCTGACGTGGATCGTCAAGTACCTTGGTGAAAACCCCAGTGTCCTAGAAGCTGTTACTGAGGAGCAAGAGTGCATATTGAAGAGCAAGGAAGAAAGTGGAAAAGATAAGGGTCTGAATTGGGAAGATGCCAAAAAGATGCCAATAACTTCAAGGGTTATTCAGGAGACTCTAAGAGTTGCTtcaattttgtcttttactttCAGAGAAGCAGTAGAGGATGTTGAATATCAAGGTCAATAA	1083	0.4386	MELSTMFCLCASFLFIVLFRTLIKPFVSKRRDLPLPPGSMGWPYIGETFQMYSQDPNVFFATKIKRYGSMFKSHILGCPCVMISSPDAAKFVLNKAQLFKPTFPASKERMLGKQAIFFHQGEYHANLRRLVLRTFMPEAIKNIVPDIESIAQDCLKSWEGRSITTFLEMKTFTFNVALLSIFGKEEILYRDALKRCYYTLEQGYNSMPINVLGTLFHKAMKARKELAQILAQIISSRRQRKQDYKDLLGSFMGEKAGLTDEQIADNVIGLIFAARDTTASVLTWIVKYLGENPSVLEAVTEEQECILKSKEESGKDKGLNWEDAKKMPITSRVIQETLRVASILSFTFREAVEDVEYQGQ	360

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Ssu2g2106	360	Gene3D	Cytochrome P450	26	360	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Ssu2g2106	360	SUPERFAMILY	Cytochrome P450	29	359	IPR036396	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Ssu2g2106	360	PRINTS	E-class P450 group I signature	282	308	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Ssu2g2106	360	PRINTS	E-class P450 group I signature	262	279	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Ssu2g2106	360	PRINTS	E-class P450 group I signature	64	83	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Ssu2g2106	360	PRINTS	E-class P450 group I signature	331	349	IPR002401	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Ssu2g2106	360	PANTHER	CYTOCHROME P450 26	11	359	-	-
Ssu2g2106	360	Pfam	Cytochrome P450	36	359	IPR001128	GO:0004497\|GO:0005506\|GO:0016705\|GO:0020037
Ssu2g2106	360	PANTHER	CYTOCHROME P450 FAMILY ABA 8'-HYDROXYLASE	11	359	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Ssu2g2106	Ssu-Chr2	76523454	76525047	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Ssu2g2106	1	359	Cytochrome P450	AT4G19230	73.151	0.0	549

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Ssu2g2106	K09843		-	gmx:100170674	685.256

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Event-related genes

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Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Ssu2g2106	2	76523454	76525047	Ssu2g2106	2	76523454	76525047	ECH

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