Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2087 ATGAAGAGCATAAACGACGATGGTTCGGCACAAGATCTCGACCCTCAAAGCGACCACAGCTCCGATTACTTGGCTCACCAGCAGCCTCAGCCTCAGCCTCGCCGTCCTCGGGGCTTCGCCGCGGCGGCGGCGGCTGGCGGCACCAATTCCTGCGGCAAGGGGAAGAAGGAgagggagaaggagaaggagcgCACGAAGCTCCGCGAGCGACACCGCCGAGCCATCACGAGCCGCATGCTCGCCGGCCTCCGTCAGTACGGGAATTTCCCCCTGCCGGCGCGTGCCGACATGAACGACGTACTCGCCGCGCTCGCGCGTGAGGCTGGCTGGGTCGTCGACGCCGACGGCACCACCTACCGCCAGTGCCCCCATCCTTCTCACATGGGGTCATTTGCGGCTAGGTCTGTTGAAAGTCAACTCTCGGGTGGTTCTTTGAGGAATTGCTCTGTTAAGGAAACGATTGAGAATCAGACATCTGTGCTTAGAATTGATGAATGCTTGTCACCTGCATCCATTGATTCTGTTGTAATTGCAGAAAGGGACTCAAAGAATGAGAAATATACAAATGCTAGCCCCATCAATACAGTTGACTGCTTGGAGGCTGATCAGCTTATGCAAGGTATTCATTCTGGGGTGCATGAAAACGACTTTACTGGCACACCATACATTCCTGTTTATGTAAAGCTTCCAGCTGATATTATTAACAAGTTTTGCCAGTTGATTAATCCTGAAGGCATCAGGCAGGAGCTAATCCATATCAAGTCCTTAAATATAGATGGCGTTGTTGTGGATTGTTGGTGGGGCATTGTTGAAGGCTGGAGCTCTCAGAAATATGTGTGGTCTGGTTATAGGGagctttttaacattattagaGAATTCAAACTGAAGTTACagGTTGTTATGGCATTTCATGAATTTGGAGGGAATGATTCTAGTGATGCATTGATTTCCCTCCCACAATGGGTTCTGGAAATTGGGAAAGACAACCAGGATATATTCTTCACAGATCGTGAAGGACGGAGGAATACCGAATGCCTTTCTTGGGGGATTGACAAAGAGCGAGTTCTGAAAGGAAGAACTGGAATTGAGGTCTATTTTGATATGATGAGAAGCTTTCGGACAGAGTTTGATGACCTGTTCGCAGAAGGTCTGATTTCTGCTGTAGAAGTTGGACTTGGAGCATCTGGGGAGCTGAAATATCCTTCTTTCTCAGAAAGAATGGGATGGAGATATCCTGGTATCGGTGAGTTTCAGTGCTATGATAAATACCTGCAACATAGTCTGCGCAGAGCAGCCAAATTACGTGGTCACTCTTTCTGGGCTAGAGGACCTGACAATGCTGGACATTACAATTCTATGCCACATGAAACTGGATTCTTTTGTGAGCGAGGTGATTATGACAACTATTATGGACGCTTCTTTTTACATTGGTACTCCCAGACATTAATAGACCATGCAGATAATGTTTTGTCTCTTGCAACCCTTGCCTTCgaggaaacaaaaataattgtcaaGGTTCCTGCTGTATACTGGTGGTATAAGACTCCTAGTCATGCAGCAGAGCTGACAGCAGGATATCATAACCCAACAAATCAGGATGGATACTCTCCTGTGTTTGAGATTCTGAGAAAACATGCGGTCACCATGAAATTTGTCTGCTTAGGATTTCATCTTTCCAGCCAGGAAGCTAATGATTCATTGATTGATCCAGAGGGTTTGAGTTGGcagGTGTTAAACTCAGCTTGGGATCGTGGATTGATGGCTGCTGGAGAGAATGCACTCCTTTGCTATGATAGAGAAGGGTATAAAAGATTGGTTGAGATGGCAAAGCCCAGAAATGATCCTGATCGCCGTCACTTCTCATTCTTTGTTTATCAGCAACCATCTTTGCTGCAGACAAATGTTTGCTTGTCCGAATTGGATTTCTTCGTCAAATGCGTGCACGGTGAGATGACAGATCTGTAA 1965 0.4565 MKSINDDGSAQDLDPQSDHSSDYLAHQQPQPQPRRPRGFAAAAAAGGTNSCGKGKKEREKEKERTKLRERHRRAITSRMLAGLRQYGNFPLPARADMNDVLAALAREAGWVVDADGTTYRQCPHPSHMGSFAARSVESQLSGGSLRNCSVKETIENQTSVLRIDECLSPASIDSVVIAERDSKNEKYTNASPINTVDCLEADQLMQGIHSGVHENDFTGTPYIPVYVKLPADIINKFCQLINPEGIRQELIHIKSLNIDGVVVDCWWGIVEGWSSQKYVWSGYRELFNIIREFKLKLQVVMAFHEFGGNDSSDALISLPQWVLEIGKDNQDIFFTDREGRRNTECLSWGIDKERVLKGRTGIEVYFDMMRSFRTEFDDLFAEGLISAVEVGLGASGELKYPSFSERMGWRYPGIGEFQCYDKYLQHSLRRAAKLRGHSFWARGPDNAGHYNSMPHETGFFCERGDYDNYYGRFFLHWYSQTLIDHADNVLSLATLAFEETKIIVKVPAVYWWYKTPSHAAELTAGYHNPTNQDGYSPVFEILRKHAVTMKFVCLGFHLSSQEANDSLIDPEGLSWQVLNSAWDRGLMAAGENALLCYDREGYKRLVEMAKPRNDPDRRHFSFFVYQQPSLLQTNVCLSELDFFVKCVHGEMTDL 654
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2087 654 Pfam BES1/BZR1 plant transcription factor, N-terminal 52 199 IPR008540 -
Ssu2g2087 654 MobiDBLite consensus disorder prediction 52 69 - -
Ssu2g2087 654 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 257 271 IPR001554 GO:0000272|GO:0016161
Ssu2g2087 654 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 517 528 IPR001554 GO:0000272|GO:0016161
Ssu2g2087 654 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 573 595 IPR001554 GO:0000272|GO:0016161
Ssu2g2087 654 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 300 321 IPR001554 GO:0000272|GO:0016161
Ssu2g2087 654 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 466 485 IPR001554 GO:0000272|GO:0016161
Ssu2g2087 654 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 393 415 IPR001554 GO:0000272|GO:0016161
Ssu2g2087 654 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 278 296 IPR001554 GO:0000272|GO:0016161
Ssu2g2087 654 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 535 558 IPR001554 GO:0000272|GO:0016161
Ssu2g2087 654 PRINTS Beta-amylase (glycosyl hydrolase family 14) signature 500 516 IPR001554 GO:0000272|GO:0016161
Ssu2g2087 654 PANTHER BETA-AMYLASE 8 57 652 - -
Ssu2g2087 654 MobiDBLite consensus disorder prediction 1 69 - -
Ssu2g2087 654 PANTHER - 57 652 IPR001554 GO:0000272|GO:0016161
Ssu2g2087 654 Pfam Glycosyl hydrolase family 14 241 616 IPR001554 GO:0000272|GO:0016161
Ssu2g2087 654 MobiDBLite consensus disorder prediction 1 28 - -
Ssu2g2087 654 Gene3D Glycosidases 213 654 - -
Ssu2g2087 654 SUPERFAMILY (Trans)glycosidases 217 651 IPR017853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2087 Ssu-Chr2 75962221 75969308 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2087 12 653 Glycoside Hydrolase AT5G45300 65.522 0.0 882
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Ssu2g2087 Glyco_hydro_14 1.8e-85 CL0058
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2087 K01177 - gmx:100777004 1250.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2087 2 75962221 75969308 Ssu2g2087 2 75962221 75969308 ECH