Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2086 ATGGGGTCCAGTAGCAGCAAAGCCACGTCATCATCGTCGTCTTCGGGTAGTTTCAGGAAGGGTCGATCTAAGGGACACAGAGGTTTCCCATCTTATTGTCTGGGAACAACGTCTGGATCTCGTGACATTGATAGTGATGACCAGGTTTGTGATCAGAATAAAGTAAATGGAGGCGATGTTACATACACCAGTGGCAATGAAATAGACTCAGATGAAGGGAAAACGGAGTCTTTTAGAAAGGTTAAATCTGATAAGTCTGACGAAGTGCCTTCCAACATTGACTTTGAGGAGTGGGGTCACACTGCATCCAGAACTGGTAGCAGCTCTGCACATTCTTCTTCAAACCAGTCCTTGAACCCTTCAAGTCGATTCCTTTCTCGCTTTAGCCTTCTTCCTGGTAACATAAGCTTCAGACTTAGCAGAACCACAAGTTTGGGGTCATCTAGGCCTTGCCCGGGGTCTTCAGCAAGTCTCTCAATATTTAACAATGAAGAAGAGCTTAGTCTGCCTCCAGGGCCTCCTGGCAGCTTGATCAATAGAAGTGAAACTCAACACCATAGCGATTTGCTTAATGCATCTTTTGTTAGTCAAGTGCCTATACAGTGTCATGAAGAAGCTTCTAATAATTTAAGATCTAATGCCCCAGCATTGGTTTCGCCTCGTAACTTGCTTAGCAGTCGCACGCTTTCTTCTGTCCAGGATGTGGTTAGAGATGGTGCTGGTACAAGAGAAGTGCCGGATGTGAACTTGTTTTCTCCAAGAACTCATGCCGATACAGAAAATATTGAGACTAGACAAACTGATAGAAGAAATGGAGCTCGAGAACCTGTTGAACGTAATGTTCGTTTTAGCCGAACTTTAAGTGTTGGAAGGCTCCGTGACAGAGTTCTGCGCCGATCAACATTATCGGACTTCACCTTTTGCCCTCTGCAacgagagagagaagggggagatGCTAGTCAAGATAATGGAAGAAGAGTAGGGGAGAGAGACACAAGAGGGTCACCATCTGGTCATAATACTGCAAATTCTTCTACACCTAGATATCCTCTACCCAGTACGCCTAGCTCCTTGTTTGGCATCCAAGACTATGAAGTCGAGACTTCACGATCTAGAGAAACTAGGTATCAGGATCTACTGGAACATAGGTCGAATTTCCTTGAACGGAGAAGAAGAATACGGTCCCAGGTCCGTGCTCTTCAGCGGTTGGGTAGCCggtttgaaaatctttctggaCATGACAGATCATGTATCTTGTCTGGTCAACATAGAAATGGTCGTTGTGCATGCCGAATCGGTAGTCGTGATACCAATTCAAATGATGATACCAATGCTAGAGCTAGCATATCAAGAATTGTTATGCTAGCTGAAGCCTTATTTGAGgttctggATGAAATTCACCAGCAATCCGTCGTTTTATCTTCTCGCCCTTCTGTGTCATCTATTGGTTCTGTTCCTGCACCTAATGAAGTTGTGGAATCCTTGCCTGTCAAATTATACACAAAGTTGCACAAACATCAAGAAGAACCCGTACAATGCTATATATGTCTTGTGGAGTATGAGGATGGAAACAGCATGCGAGTTCTGCCTTGTCATCATGAATTTCATACAACATGTATAGACAAGTGGCTGAAGGAGATTCACAGACCGGTCAACCGAGTGGcttcaaaacaaaaaactgcCGTGCATGCGTGTGATGATAtccttttcacttttcagagaaaaaagggaaaagaagcaTTTCAATTGCAGTGTAAATTGAGGGAGACAAGTGGTAGTTGTCTCCTAACAGTCCTGAAAGACCACCAGCTACACTGCTTTGTTGTACAATTTGGTCTGCCTTGTGTTCTTCCCAACGCATTATCATGA 1869 0.4189 MGSSSSKATSSSSSSGSFRKGRSKGHRGFPSYCLGTTSGSRDIDSDDQVCDQNKVNGGDVTYTSGNEIDSDEGKTESFRKVKSDKSDEVPSNIDFEEWGHTASRTGSSSAHSSSNQSLNPSSRFLSRFSLLPGNISFRLSRTTSLGSSRPCPGSSASLSIFNNEEELSLPPGPPGSLINRSETQHHSDLLNASFVSQVPIQCHEEASNNLRSNAPALVSPRNLLSSRTLSSVQDVVRDGAGTREVPDVNLFSPRTHADTENIETRQTDRRNGAREPVERNVRFSRTLSVGRLRDRVLRRSTLSDFTFCPLQREREGGDASQDNGRRVGERDTRGSPSGHNTANSSTPRYPLPSTPSSLFGIQDYEVETSRSRETRYQDLLEHRSNFLERRRRIRSQVRALQRLGSRFENLSGHDRSCILSGQHRNGRCACRIGSRDTNSNDDTNARASISRIVMLAEALFEVLDEIHQQSVVLSSRPSVSSIGSVPAPNEVVESLPVKLYTKLHKHQEEPVQCYICLVEYEDGNSMRVLPCHHEFHTTCIDKWLKEIHRPVNRVASKQKTAVHACDDILFTFQRKKGKEAFQLQCKLRETSGSCLLTVLKDHQLHCFVVQFGLPCVLPNALS 622
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2086 622 MobiDBLite consensus disorder prediction 101 120 - -
Ssu2g2086 622 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 1 549 - -
Ssu2g2086 622 MobiDBLite consensus disorder prediction 1 94 - -
Ssu2g2086 622 MobiDBLite consensus disorder prediction 334 358 - -
Ssu2g2086 622 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 476 555 IPR013083 -
Ssu2g2086 622 Pfam RING-like zinc finger 512 540 IPR001841 -
Ssu2g2086 622 SUPERFAMILY RING/U-box 491 546 - -
Ssu2g2086 622 MobiDBLite consensus disorder prediction 50 68 - -
Ssu2g2086 622 MobiDBLite consensus disorder prediction 313 358 - -
Ssu2g2086 622 MobiDBLite consensus disorder prediction 1 19 - -
Ssu2g2086 622 SMART ring_2 513 565 IPR001841 -
Ssu2g2086 622 MobiDBLite consensus disorder prediction 69 94 - -
Ssu2g2086 622 ProSiteProfiles Zinc finger RING-type profile. 513 553 IPR001841 -
Ssu2g2086 622 MobiDBLite consensus disorder prediction 315 333 - -
Ssu2g2086 622 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 1 549 - -
Ssu2g2086 622 CDD mRING-H2-C3H2C2D_ZSWM2 512 545 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2086 Ssu-Chr2 75954158 75959011 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2086 232 551 C3H Transcription Factor Family AT5G45290 60.976 4.63e-108 334
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2086 - - gmx:100815830 886.715
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2086 2 75954158 75959011 Ssu2g2086 2 75954158 75959011 ECH