Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2080 ATGAAGCAGCCATCAAAGCCATGGAGACCCTTCACGGCAAATTGCTGCTCCACGGAGGACCAAACCATCTTTAGAAACTTCAGCAGGTGCAAGCCATCCCGTTCGGATTTGTCAAAGGACATAGCCCCTTTGCCATCGTTTAGGAGGCTGTCTTTCTCTGATCTCAGCCGTTCGTCGTCGGCGCGAATCAACGAAGATCTTGCGCAGTCTTTTGGTTCGGATTTGTGTGATTTTCAGCTGAGTGAGCTGCGTGCCGTAACCCAGAATTTTTCGAGTAATTTCTTGCTGGGTGAAGGCGGGTTTGGAACGGTGCATAAGGGTTACATAGATGACAATTTGAGGCAGGCTTTGAAGGCACAGCCTGTTGCAGTCAAGCTTCTTGACATTGAAGGCTTTCAAGGACACCGTGAATGGCTCGCAGAAGTGATTTTTCTTGGGCAGCTACGACACCCCAATTTGGTTAAGTTGATTGGGTATTGTTGTGAAGATGAAGAACGACTACTTGTCTATGAATTCATGCCACGAGGAAGCTTGGAGAATCACCTCTTCAGAAGGCTAACATCACTGCCATGGGGAACAAGATTAAGAATCGCAATAGGTGCAGCTAAAGGCCTTTCCTTCTTGCATGGAGCTGAGAAACCAGTCATTTATAGGGACTTCAAGACTTCCAATGTTTTGCTTGATTCAGAGTTCACAGCAAAATTGTCAGATTTTGGACTTGCAAAAATGGGGCCAGAGGGATCAAACACACACGTTTCAACCAGAGTTATGGGCACTTATGGATATGCAGCCCCAGAATACATCTCAACAGGGCACTTGACCACCAAAAGTGATGTCTATAGCTTCGGGGTAGTCCTGCTAGAACTGCTAACTGGAAGGAGAGCAATGGACAAAACAAGACCAAAGACTGAGCAAAACCTAGTGGATTGGTCAAAACCTTACTTGAGTAGCAGTAGGAGGTTGAGGTACATTATGGATCCAAGGCTTGCAGGCCAATATTCTGTGAAAGGTACAAAGGAGATGGCCCATTTGGCATTGCAATGCATAAGTTTGAATCCTAAAGACAGACCAAGAATGCCAACGATTGTTGAAACTCTTGAAAGCTTGCAACAGTACAAGGACATGGCTGTAACCAGTGGACACTGGCCAGTGTCACCGAAATCTAGAGTCTCCAACAATAAGGTGAAAACTAGAGCCGGTGCAAACCACAAGCAACCATCTCCTCCAGTTCCGAGCAGAAAAACTTGA 1248 0.4615 MKQPSKPWRPFTANCCSTEDQTIFRNFSRCKPSRSDLSKDIAPLPSFRRLSFSDLSRSSSARINEDLAQSFGSDLCDFQLSELRAVTQNFSSNFLLGEGGFGTVHKGYIDDNLRQALKAQPVAVKLLDIEGFQGHREWLAEVIFLGQLRHPNLVKLIGYCCEDEERLLVYEFMPRGSLENHLFRRLTSLPWGTRLRIAIGAAKGLSFLHGAEKPVIYRDFKTSNVLLDSEFTAKLSDFGLAKMGPEGSNTHVSTRVMGTYGYAAPEYISTGHLTTKSDVYSFGVVLLELLTGRRAMDKTRPKTEQNLVDWSKPYLSSSRRLRYIMDPRLAGQYSVKGTKEMAHLALQCISLNPKDRPRMPTIVETLESLQQYKDMAVTSGHWPVSPKSRVSNNKVKTRAGANHKQPSPPVPSRKT 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2080 415 ProSitePatterns Serine/Threonine protein kinases active-site signature. 215 227 IPR008271 GO:0004672|GO:0006468
Ssu2g2080 415 Gene3D Transferase(Phosphotransferase) domain 1 173 383 - -
Ssu2g2080 415 Pfam Protein tyrosine and serine/threonine kinase 95 366 IPR001245 GO:0004672|GO:0006468
Ssu2g2080 415 ProSiteProfiles Protein kinase domain profile. 90 369 IPR000719 GO:0004672|GO:0005524|GO:0006468
Ssu2g2080 415 MobiDBLite consensus disorder prediction 378 415 - -
Ssu2g2080 415 PANTHER OS01G0588500 PROTEIN-RELATED 31 408 - -
Ssu2g2080 415 SUPERFAMILY Protein kinase-like (PK-like) 74 368 IPR011009 -
Ssu2g2080 415 PANTHER SERINE/THREONINE-PROTEIN KINASE PBL15-RELATED 31 408 - -
Ssu2g2080 415 CDD STKc_IRAK 96 369 - -
Ssu2g2080 415 MobiDBLite consensus disorder prediction 384 400 - -
Ssu2g2080 415 Gene3D Phosphorylase Kinase; domain 1 52 172 - -
Ssu2g2080 415 ProSitePatterns Protein kinases ATP-binding region signature. 96 125 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2080 Ssu-Chr2 75672666 75677961 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2080 78 387 Glycoside Hydrolase AT3G07070 50.955 1.79e-103 311
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Ssu2g2080 PK_Tyr_Ser-Thr 1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2080 - - gmx:100814241 770.77
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2080 2 75672666 75677961 Ssu2g2080 2 75672666 75677961 ECH