Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2073 ATGTTCGGCGGCGGAGGGGACGACGCGCTGGCGGCGGCGAGGGAGGAGAGGGGTCCGGCGCAGCCCCAGTGGAGCCAGCAGGAGACGAGGGAGTTCATAGCGATACGCGCGGAGCTGGAGAGGGACTTCACGGCGTCGAAGCGGAACAAGACGCTTTGGGAGGTGGTGAGTGCCAAGATGAGGGAGAGAGGGTTCAGGAGAAGCCCCGAACAGTGCAAATGCAAGTGGAAGAACCTCGTTAATCGCTATAagGGAAAAGAGACATCTGACCCAGAACATGGTAGGCATTGCCCCTTTTTTGAAGAATTGCATGCAGTCTTTACCCAAAGAGCACATAACATGCAACGATTGCTTCTTGAATCTGAAACTCGTTCAACCCAAACCAAGAAAGGGGTGAAAAGATCAAGTGGAGACCGGTCCTCAGAGGAACTCTCAGAAGATGATGATGAGGTTGAATATGATAGCGAAGAGGAAAAACCTTCCAGAAGCAATACCCGCAAAAGGAAAGTTGACAAAGTTGGAATGGAGAAGTCTTCAAGGGCAAACAATCCATCAAATGCTGTCAGTAATAGTACTAGTAGTATTCAGGAAATGCTCAAGGAATTTTTCCAGCACCAGTTAAGGATGGAGATGCAGTGGAGGGAGATGATGGAAAGGCGTGCTCATGAAAGACAGTTGTTTGAACAGGAATGGCGGCAGTCAATGGAGAAGCTTGAGAGGGAGAGATTAATGATTGAACAGGCATGGAGGGAGAGAGAAGAACagaggagaatgagagaagagagtaGGGCAGAGAGAAGGGATGCTTTGTTGACGACCCTTTTGAGCAAACTCATTAATGAATCTAACTAA 852 0.4777 MFGGGGDDALAAAREERGPAQPQWSQQETREFIAIRAELERDFTASKRNKTLWEVVSAKMRERGFRRSPEQCKCKWKNLVNRYKGKETSDPEHGRHCPFFEELHAVFTQRAHNMQRLLLESETRSTQTKKGVKRSSGDRSSEELSEDDDEVEYDSEEEKPSRSNTRKRKVDKVGMEKSSRANNPSNAVSNSTSSIQEMLKEFFQHQLRMEMQWREMMERRAHERQLFEQEWRQSMEKLERERLMIEQAWREREEQRRMREESRAERRDALLTTLLSKLINESN 283
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2073 283 ProSiteProfiles Myb-like domain profile. 24 80 IPR001005 -
Ssu2g2073 283 PANTHER - 21 281 - -
Ssu2g2073 283 MobiDBLite consensus disorder prediction 126 141 - -
Ssu2g2073 283 SMART sant 20 82 IPR001005 -
Ssu2g2073 283 MobiDBLite consensus disorder prediction 178 193 - -
Ssu2g2073 283 Pfam Myb/SANT-like DNA-binding domain 22 105 IPR044822 -
Ssu2g2073 283 Gene3D - 24 85 - -
Ssu2g2073 283 Coils Coil 228 248 - -
Ssu2g2073 283 CDD GT1 22 87 - -
Ssu2g2073 283 PANTHER - 21 281 - -
Ssu2g2073 283 MobiDBLite consensus disorder prediction 156 176 - -
Ssu2g2073 283 MobiDBLite consensus disorder prediction 119 193 - -
Ssu2g2073 283 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2073 Ssu-Chr2 75591136 75593184 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2073 18 278 Trihelix Transcription Factor Family AT2G38250 45.660 8.21e-50 164
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Trihelix Ssu2g2073 Myb_DNA-bind_4 1.7e-22 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2073 - - gmx:100812635 446.432
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2073 2 75591136 75593184 Ssu2g2073 2 75591136 75593184 ECH