Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2061 ATGGGATACGATTCGGATAGCCCATCGCAAGATGGGAGGGATGAAGATGACGAAGAAGAATATGAGGAGTCTGGCAAGGGTAATCGTTTTCTTGGGTTCATGTTTGGAAATGTAGATAATTCTGGTGATCTCGATGTTGATTATCTTGACGAGTTGTCAGGAAAATCACCACAAACACTACCTGACGTTGTTGAACAAGaCTGTGATGAAAAAGCTGAAGATGCTGTTGATTATGAAGATATTGATGAAGAGTATGATGGTCCAGAGACAGAAGCTGCCAATGAAGAGGACTATTTATTACCAAAAAAGGAATTTTTCTCCAGTCAAGCCTCTGTATGTTTGGAATCCAAAGCTTCTGTCtttgatgatgaaaattatGATGAAGAATCTGAAAAGGAGCAAGACTTTGTGAATGACGATTCTAAAGTTGATAACATCTCTTTAGTTGCCTTGTTCAGATATTGGCTGGAGACAGATGAAGGGCCTGAAGTTCAGAAAAGGTCTATGGCTATGCCATTACCTGTTTTATGTGTGGAAGATGGTGAGGAAATTTTACGCTTCTCTGAAATATTTGGCAATTTTGAACCTCTCAGAaagggagaaaagagagagcATCGGCATTCTATTCCTAGAGATAGATACAAGTCTTTGGATTTAACTGCTGATTTTGTAGAAGAGGATGAAGAGGAATTCCTCAAGGGCTTCTCTCAGAGTCTCTCACTTACTAAACAGGTTTGTGCAGTTCATAATGATGTATCAGAAAGCAATGATGTTGACATGGAGTTTCCAAAATTTGGAGTTCTTCATGCGGATGCCTCAGTGGCCAGGAAAGATGATCAACAACTTAAGGACTCATGTCATAGTGCTGAACCAATGAAAGGGGATTTTGCAGAAGATCTTTCCTTGAAAGATCATCCTTTGACATGGGCcaacttttatcctttttatcaGCAAAACTGGGAAGATGAAATCCATTGGGGCAATTCTCCTGTTCCAAGTGATAATAATGTTGAAAGTTGTGAAATTTCTGGGCCTGAGTTGGGAGCTTCTGGTGGCAGTGAAATAGAAATTGAAAGTGGGATCCAGAATATTCAGATGGAGCCTCAGAAGATACTGGAGGATAAAGATCATAATGTCTTCATGTGCAGCTCTCCTGTCTTGTTGGAGCCCCTTGGCTCAAGGGATTCTTCTGGAGCTAAGACCAATTTAATATCCAGAAGTCTATTTCACCCCCAACTTTTAAGGCTAGAATCCAGATCTGAAGTGGATAGTTCTAGTCTTGCAGATGGAAAAGAGGCAGAGATATCTGACCATAATCAAAGTGGTCAAGTAAAGCGTTTTACCAAGGTTATGTCACAAAACAGAGACATGATGGAGGGTTCCTGGTTAGACAAGATAATATGGGAGGAGCTTGATCAGCCTACGGTGAAACCAAAGCTTATCTTTGATCTTCAGGATGATCAAATGCACTTTGAAGTTTCAGATAGCAAGGATGGTACACATCTTCGCCTTCATGCTGGGGCTATGATTTTAACTCGTTCTTTAAAATCAAGTAGTGGCGACTCTTCTGAGCTACCGGGACATGGAAGTCAATATGGATGGCGATATGTTGCTAATGACAAACATTATTCAAACCGTAAAACTTCTCAGCAACTTAAATCAAATTCCAAAAAACGCTCAGCTCATGGTGTCAAAGTTTTTCACTCACAACCTGCATTGAAGCTGCAGACGATGAAATTAAAGTTGAGCAaTAAAGATATTGCAAATTTTCACCGGCCAAAAGCATTATGGTATCCCCATGACAATGAGGTGGCTGTCAAAGAACAAGGGAAATTGCCAACACAAGGACccatgaaaattattataaagagtTTGGGTGGCAAGGGAAGTAAACTGCATGTCGATGCTGAAGAAACTCTCTCTTCTGTTAAAGCAAAAGCCTCCAAAAAGCTAGattttAAGGCATCAGAAACAGtgacaatattttatttggggAGGGAGCTTGAAGATCACAAATCACTTGCTGCACAAAATGTTCAACCAAACTCCTTGTTACATCTTGTTCGTACAAAGATACAGTTGTGGCCAAAAGCACAAAGGGTTCCTGGTGAGAACAAGTCCTTGCGTCCTCCTGGGGCATTCAAGAAAAAGTCTGATCTGTCTGTAAAAGATGGACATGTTTTTCTTATGGAGTATTGTGAAGAAAGGCCTTTACTTTTGAGCAATGTTGGAATGGGTGCAAGACTTTGTACATACTATCAAAAATGCTCACCGGATGACCAATCTGGCTCCTTATTACGCAACACGGATAGTAACTTGGGACACATTATTTCTCTGGATCCTGCTGATAAATCTCCTTTCCTTGGAGATTTAAAACCTGGTTGCAGTCAGTCATCACTTGAGACAAATATGTATAGAGCACCCGTATTTCCTCATAAGGTTCCATTAACTGACTACCTGCTGGTTCGTTCATCAAAGGGAAAGCTATCCTTAAGGCGCattgacaaaattaatgttGTTGGACAGCAGGAGCCTCTTATGGAGGTATTATCACCTGGAAGTAAAAATCTTCAGACTTACATGATGAATAGGCTATTGGTACACATGTGCCGTGAATTCCAATCAGCAGAGAAGCGGCACTTGCCTCCTTATATCCGTGTTGATGAATTTCTTTCACAGTTTCCTTACCAATCAGAAGCGTCATTCCGTAAAAAAATCAAGGAATATGCCAATTTACAGAGGGGAACAAATGGACAgtcaattttggttaaaaagcgAAATTTTCGCATGTGGTCGGAggatgaattaagaaaaatggtTACACCAGAGCTTgtATGTGCCTATGAAAGCATGCAAGCTGGCCTCTACCGTCTAAAACATTTAGGAATAACTGAAACACACCCTACTAATATTTCATCTGCCATGAGTCGGCTTCCTGATGAAGCAATAGCATTGGCTGCTGCATCACACATTGAGAGGGAACTGCAGATTACTCCTTGGAACTTGAGTAGCAATTTTGTTGCTTGTACAAGCCAGGGTAAGGAAAATATTGAACGAATGGAAATTACTGGTGTTGGTGATCCATCTGGTCGTGGCATGGGTTTTAGCTATGCTCGGGCACCTCCAAAGGCACCAGTGTCTAGTGCAATGGTGAAGAAGAAAGCAGCTGCTAATCGTGGAGGTTCTACTGTTACTGGTACAGATGCTGATCTACGTAGATTAAGCATGGAGGCTGCTCGAGAGGTTCTTCTTAAGTTCAATGTTCCTGAGGAAGTTATTGCAAAACAAACTAGGTGGCATCGCATTGCTATGATACGTAAACTTTCAAGTGAGCAAGCTGCATCTGGGGTTAAGGTTGATCCGACAACTATCAGCAAATATGCTCGTGGCCAGCGAATGTCCTTTCTTCAGTTACAGCAGCAGACCAGAGAGAAATGCCAGGAGATTTGGGATCGACAAGTTCAGAGTCTGTCAGCTGTCAATGGTGATGAAAATGAGAGCGATTCAGAAGGGAATAGTGATCTGGATTCTTTTGCTGGAGATCTGGAAAATTTACTTGATGCTGAGGAGTGTGAAGAGGGAGAAGAGGGTACCAATGACTTAAAACGTGATAAGGGAGATGGTGTTAAGGGTCTTAAAATGAGAAGACGCCCAACTTTGGCTCAGGCAGAGGAGGAAATAGAAGATGAAGCAGCTGAGGCTGCTGAATTATGCAGGTTGCTTATGGATGATGATGAAGCTGacaggaagaaaaagaagaaagctaAAGTTATGGTTGAAGAAGCAAGATTGGTACCAAAGATGCAATCAAAATTTGCCTTTGACAATGCTGAACAAGTTAAGCAAATAACAAGTACTTCACAATTAGATGGAACTAATCACTTGAAAGAGGACACAATCACAGATCTTAGGGAGGAGGAAAACTTTCCTgctaaaaaaagtaaatcacTGAAGGTCAATAAAAGCCAAGAAGAATGA 3978 0.3952 MGYDSDSPSQDGRDEDDEEEYEESGKGNRFLGFMFGNVDNSGDLDVDYLDELSGKSPQTLPDVVEQDCDEKAEDAVDYEDIDEEYDGPETEAANEEDYLLPKKEFFSSQASVCLESKASVFDDENYDEESEKEQDFVNDDSKVDNISLVALFRYWLETDEGPEVQKRSMAMPLPVLCVEDGEEILRFSEIFGNFEPLRKGEKREHRHSIPRDRYKSLDLTADFVEEDEEEFLKGFSQSLSLTKQVCAVHNDVSESNDVDMEFPKFGVLHADASVARKDDQQLKDSCHSAEPMKGDFAEDLSLKDHPLTWANFYPFYQQNWEDEIHWGNSPVPSDNNVESCEISGPELGASGGSEIEIESGIQNIQMEPQKILEDKDHNVFMCSSPVLLEPLGSRDSSGAKTNLISRSLFHPQLLRLESRSEVDSSSLADGKEAEISDHNQSGQVKRFTKVMSQNRDMMEGSWLDKIIWEELDQPTVKPKLIFDLQDDQMHFEVSDSKDGTHLRLHAGAMILTRSLKSSSGDSSELPGHGSQYGWRYVANDKHYSNRKTSQQLKSNSKKRSAHGVKVFHSQPALKLQTMKLKLSNKDIANFHRPKALWYPHDNEVAVKEQGKLPTQGPMKIIIKSLGGKGSKLHVDAEETLSSVKAKASKKLDFKASETVTIFYLGRELEDHKSLAAQNVQPNSLLHLVRTKIQLWPKAQRVPGENKSLRPPGAFKKKSDLSVKDGHVFLMEYCEERPLLLSNVGMGARLCTYYQKCSPDDQSGSLLRNTDSNLGHIISLDPADKSPFLGDLKPGCSQSSLETNMYRAPVFPHKVPLTDYLLVRSSKGKLSLRRIDKINVVGQQEPLMEVLSPGSKNLQTYMMNRLLVHMCREFQSAEKRHLPPYIRVDEFLSQFPYQSEASFRKKIKEYANLQRGTNGQSILVKKRNFRMWSEDELRKMVTPELVCAYESMQAGLYRLKHLGITETHPTNISSAMSRLPDEAIALAAASHIERELQITPWNLSSNFVACTSQGKENIERMEITGVGDPSGRGMGFSYARAPPKAPVSSAMVKKKAAANRGGSTVTGTDADLRRLSMEAAREVLLKFNVPEEVIAKQTRWHRIAMIRKLSSEQAASGVKVDPTTISKYARGQRMSFLQLQQQTREKCQEIWDRQVQSLSAVNGDENESDSEGNSDLDSFAGDLENLLDAEECEEGEEGTNDLKRDKGDGVKGLKMRRRPTLAQAEEEIEDEAAEAAELCRLLMDDDEADRKKKKKAKVMVEEARLVPKMQSKFAFDNAEQVKQITSTSQLDGTNHLKEDTITDLREEENFPAKKSKSLKVNKSQEE 1325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2061 1325 PANTHER TRANSCRIPTION INITIATION FACTOR TFIID 15 1247 IPR040240 GO:0001091|GO:0004402|GO:0005669|GO:0006366|GO:0017025
Ssu2g2061 1325 MobiDBLite consensus disorder prediction 1 30 - -
Ssu2g2061 1325 MobiDBLite consensus disorder prediction 1191 1227 - -
Ssu2g2061 1325 SUPERFAMILY Ubiquitin-like 588 688 IPR029071 -
Ssu2g2061 1325 Pfam Protein of unknown function (DUF3591) 538 1104 IPR022591 -
Ssu2g2061 1325 Coils Coil 1220 1240 - -
Ssu2g2061 1325 MobiDBLite consensus disorder prediction 1159 1178 - -
Ssu2g2061 1325 Gene3D - 600 690 - -
Ssu2g2061 1325 Pfam Ubiquitin family 620 690 IPR000626 GO:0005515
Ssu2g2061 1325 ProSiteProfiles Ubiquitin domain profile. 618 688 IPR000626 GO:0005515
Ssu2g2061 1325 MobiDBLite consensus disorder prediction 420 445 - -
Ssu2g2061 1325 SMART ubq_7 618 690 IPR000626 GO:0005515
Ssu2g2061 1325 MobiDBLite consensus disorder prediction 1295 1325 - -
Ssu2g2061 1325 MobiDBLite consensus disorder prediction 1283 1325 - -
Ssu2g2061 1325 MobiDBLite consensus disorder prediction 1196 1224 - -
Ssu2g2061 1325 MobiDBLite consensus disorder prediction 545 564 - -
Ssu2g2061 1325 MobiDBLite consensus disorder prediction 422 439 - -
Ssu2g2061 1325 PANTHER BNAA01G26290D PROTEIN 15 1247 - -
Ssu2g2061 1325 CDD Ubl_TAFs_like 618 689 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2061 618 688 Cytoplasmic Ribosomal Protein Gene Family AT3G62250 40.845 5.16e-08 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2061 K03125 - gmx:100780733 2323.89