Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2043 atgGCCGTGACTCTGACGCCAAGGGCGATAACAGAGATATGCAGTGACAATTACTCCGAGGACTTGAAGCCGGTGTTGCAAGTTATAGAGTTGAAGCTGGTGCAGTCGCAGCAACACAGCAACACCGAGAGGTTCCGTTTGTTTCTCTCCGACGGGTCCGTTTACCAGCAAGGGATGCTCTTCACGCAAAAGAATGAGTTGGTTCATTCTGGACGGTTGCAGAAAGGCTCTGTTGTTAGACTCACTCAATTCATCTGCAACTCTGTTCAGGGCCGCCAGATTCTTATCGTTGTTGACGTAGATGTTATACTGGACAAATGTGAGCTATTTGGAGAACCTATCGCACCAAAAGGGAATCCTTCTGCCAGTAGTGTTTATTCTAGTATTTATAACTCTGGATCTAGTTATTCTAGTAATGCCCCTCCTACGTATCCTAAAGCAGATCCTGGATTGAGTTTGCCTAGATCAGCACTAAAAGTGAATACTCCTGCCAGTAGCGTTCATTCTAGTATTTATAACTCTGGATCTAGTTATTCTAGCAATGCCCCTCCTACTTATCCTAAAGCAGAGCCTGGAGTTGGTTTGCCGGTGTTTCTAGTTTTGGAGTTGAAGCTGGTGCAGTCGCAGCAAGACAGCAACACCGATTGGTTCCGTTGGTTCTCTCCGACGGTTCCCTTTACCGGCAAGCGAGGCTCGCCACGCATAAGAACGAGTTGGTTTATTCTGGAAGGTTGCAGAAAGGCTCCGTTGTTAGACTCACTCAGTTCATCCACCACGTTGTCCACAGCCGCGAAATGA 798 0.4712 MAVTLTPRAITEICSDNYSEDLKPVLQVIELKLVQSQQHSNTERFRLFLSDGSVYQQGMLFTQKNELVHSGRLQKGSVVRLTQFICNSVQGRQILIVVDVDVILDKCELFGEPIAPKGNPSASSVYSSIYNSGSSYSSNAPPTYPKADPGLSLPRSALKVNTPASSVHSSIYNSGSSYSSNAPPTYPKAEPGVGLPVFLVLELKLVQSQQDSNTDWFRWFSPTVPFTGKRGSPRIRTSWFILEGCRKAPLLDSLSSSTTLSTAAK 265
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2043 265 Pfam Replication factor-A protein 1, N-terminal domain 5 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Ssu2g2043 265 SUPERFAMILY Nucleic acid-binding proteins 1 109 IPR012340 -
Ssu2g2043 265 CDD RPA1N 15 103 IPR007199 GO:0003677|GO:0005634|GO:0006260
Ssu2g2043 265 Gene3D - 4 116 IPR012340 -
Ssu2g2043 265 PANTHER REPLICATION PROTEIN A SUBUNIT 5 114 - -
Ssu2g2043 265 PANTHER REPLICATION FACTOR A 1, RFA1 5 114 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2043 Ssu-Chr2 74174126 74176386 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2043 1 116 Core DNA Replication Machinery Family AT5G45400 43.802 5.13e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2043 K07466 - gmx:100778597 193.356
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2043 2 74174126 74176386 Ssu2g2043 2 74174126 74176386 ECH