Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2042 ATGCTCGCCACGCAGAAGAACGACTTGGTTCGTTCTGAAAGGTTGCAGAAAGGCTCCATTGTTAGACTCACTCAGTTCATCTGCAACGATGTCCAGAACCGCAAGATTATTATCATCGTTGACCTAGATGTTATAGTGGACAAATGTGAGCTGATTGGAGAACCTGTCACAGCACCAAGAGGTCCACGTGCAGAATCTGCCACTGGTCAATCGGGAGTCAGCTCTGGGAATTCACAATCTTTAAATAGCAGTTCACATGCTGGTGGCATGACTGCTAGACCAAATCTGTCTGTGCCGTCTCTGGATCATTCAAAAGTGAATCCTCCTGCAAGTGGTGTTTATTCTAGTATTTCTAGCTCTGGATTTAGTTATTCTAGTAATGCCCCTCCTACTTATCCTAAAGCAGAGCCTGGAGTCAGTTTGCCTAGATCAGCACCATTCAGTGGGTTTTATGGTGATCAGAACACAGGTTTCCGTAATACCCAATCTGAGGCTTCAAGGCCCTTGCAAAGCTCTTATGCTCGTCCCCCTCAACCGATGTACCGGCCGCCATCTCCAATGTACAGTAACAGAGCGCCACTTGGAAGAAATGATGCTCCCCCCAGGATAATTCCAATAGCGGCATTGAATCCGTACCAGAATATGTGGACAATTAAAGCCAGGGTAACAGCTAAGGGAGAACTCAGGCACTATAACAATGCCCGAGGCGAAGGGAAAGTCTTTTCTTTTGACCTTCTGGATTCTGATGGTGGAGAAATTCGGGCAACTTGCTTCAATACTGTGGCTGATCAGttctataatttaattgaagCTGGTAAGGTATATCTAGTTTCCAGGGGAAGCATAAAGCCAGCTCAGAAGAATTTTAATCACCTTCGCAATGATCAAGAGCTAACCCTTGATGTGACATCAATTATACAGCCATGCCTTGATGATGATAGCTCAATTCCAAAGCAGACATTTAATTTCCGTCCAATTAGTGAAATTGAAAGTGTGGAAAGCAACAGCATTGTGGATGTGATTGGTGTGGTGTCTTCTGTAAGTCCTACAGCTTCAATCATGAGAAAAAATGGCACTGAAACTCAGAAGAGAACTCTCCAGTTGAAAGACATGACTGGCCGAAGTGTTGAGTTAACTTTATGGGGAAATTTTTGCAATGTAGAAGGACAAAGGTTGCAAACTATTTGTGATTCTGGGGCATTTCCAGTTCTGGCTACAAAAGCTGTCAGAGTAAATGATTTCAACGGGAAGTCTGTTGGAACTATAGCCACTAGCCAGCTATTTGTAGAGCCTGATTTTCCTGAGGCTTGTACACTGAAAAGATGGTATGAAAATGAAGGGAAGAATGTCCCAACTCTCTCTATTTCCAGAGAAACATCCAATTTTGGTAAGACTGATGTGCGGAAGACTATATCTCAAATTAAAGATGAGAAGTTAGGGACTTCAGAGAAGCCTGATTGGATATCTGTCTGTGCAAGTGTTTCATTCATTAAGGTTGATAACTTCTGTTACCCAGGATGCCCTATCATGATAGGGGATAGGCAATGCAACAAAAAGGTGACTAATAATGGAGATGGGAAATGGCATTGTGACAGGTGTAATCAATCTATTGATGCTTGTGATTATAGGTACATACTGTCATTCCAGATACAGGATCACACTGGCGTAACATGGGTTACTGCTTTCCAGGAGAGCGGCGAGGAGATCATTGGTGCACCTGCAAAAGATTTGTATTATCTGAAGTATGAAGAGCAAGATGATGAAAGATTTGCTGAAATCATCCGCAAGGTTCTCTTTGCCAAGTATGTGTTCAAGTTAAGAATAAAGGAGGAGACATTCAGCGATGAACAACGCGTTAAGTCAACGGTAGTAAAAGCAGAGAAGGTGAGCTTTGCATCTGAATCTAGAGTTCTTTTGGATTTGATTGATAAACTCAAGACTGAGAAATCAGAAGGTACAACGACGGTTCCTAACTCTGTAACCAATAATACTGGATTGGGGAGCGTTGAAACTGGACAACTTAAGCCACCAGCTTATAATCCTATAAAGGGCAATGCTGATACCAGTAGAGATTATGGGATGCCAGCACATCAAGTGGGTCAGTATGGAAACCAATATAACAATTTTGCTTCAGCAGGTGCTCCTGGTTCATATACGTCATGTACCAACTGTGGAGGCTCTGGTCATAGCTCTGTACTTTGCCCAAATATTAGAAATCTACCTGGACAGTCTGTAGGAGGGGCCTTTGCCAACAGGGTATCTGCTGGATCAGGTGGTGGTGCATCTGGCGACTGCTTCAAATGCCATCAACCTGGCCACTGGGCAAGAGACTGTCCTGGTTTCAGTGCAGTACCTCCAGCATATGGAAGCAATAATGTAATTCAAGGAAGATATGGGATTGCTCAAAAGCAACAATTTGGAGGATATTGA 2430 0.4309 MLATQKNDLVRSERLQKGSIVRLTQFICNDVQNRKIIIIVDLDVIVDKCELIGEPVTAPRGPRAESATGQSGVSSGNSQSLNSSSHAGGMTARPNLSVPSLDHSKVNPPASGVYSSISSSGFSYSSNAPPTYPKAEPGVSLPRSAPFSGFYGDQNTGFRNTQSEASRPLQSSYARPPQPMYRPPSPMYSNRAPLGRNDAPPRIIPIAALNPYQNMWTIKARVTAKGELRHYNNARGEGKVFSFDLLDSDGGEIRATCFNTVADQFYNLIEAGKVYLVSRGSIKPAQKNFNHLRNDQELTLDVTSIIQPCLDDDSSIPKQTFNFRPISEIESVESNSIVDVIGVVSSVSPTASIMRKNGTETQKRTLQLKDMTGRSVELTLWGNFCNVEGQRLQTICDSGAFPVLATKAVRVNDFNGKSVGTIATSQLFVEPDFPEACTLKRWYENEGKNVPTLSISRETSNFGKTDVRKTISQIKDEKLGTSEKPDWISVCASVSFIKVDNFCYPGCPIMIGDRQCNKKVTNNGDGKWHCDRCNQSIDACDYRYILSFQIQDHTGVTWVTAFQESGEEIIGAPAKDLYYLKYEEQDDERFAEIIRKVLFAKYVFKLRIKEETFSDEQRVKSTVVKAEKVSFASESRVLLDLIDKLKTEKSEGTTTVPNSVTNNTGLGSVETGQLKPPAYNPIKGNADTSRDYGMPAHQVGQYGNQYNNFASAGAPGSYTSCTNCGGSGHSSVLCPNIRNLPGQSVGGAFANRVSAGSGGGASGDCFKCHQPGHWARDCPGFSAVPPAYGSNNVIQGRYGIAQKQQFGGY 809
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2042 809 MobiDBLite consensus disorder prediction 149 173 - -
Ssu2g2042 809 Gene3D - 202 312 IPR012340 -
Ssu2g2042 809 SUPERFAMILY Nucleic acid-binding proteins 1 53 IPR012340 -
Ssu2g2042 809 Pfam Replication factor-A C terminal domain 487 638 IPR013955 -
Ssu2g2042 809 SMART c2hcfinal6 764 780 IPR001878 GO:0003676|GO:0008270
Ssu2g2042 809 SMART c2hcfinal6 720 736 IPR001878 GO:0003676|GO:0008270
Ssu2g2042 809 SUPERFAMILY Nucleic acid-binding proteins 468 645 IPR012340 -
Ssu2g2042 809 MobiDBLite consensus disorder prediction 145 190 - -
Ssu2g2042 809 MobiDBLite consensus disorder prediction 652 670 - -
Ssu2g2042 809 PANTHER REPLICATION PROTEIN A SUBUNIT 1 682 - -
Ssu2g2042 809 MobiDBLite consensus disorder prediction 652 679 - -
Ssu2g2042 809 MobiDBLite consensus disorder prediction 67 104 - -
Ssu2g2042 809 Pfam Replication protein A OB domain 326 429 IPR031657 -
Ssu2g2042 809 SUPERFAMILY Nucleic acid-binding proteins 202 316 IPR012340 -
Ssu2g2042 809 MobiDBLite consensus disorder prediction 55 104 - -
Ssu2g2042 809 Pfam Replication factor-A protein 1, N-terminal domain 1 46 IPR007199 GO:0003677|GO:0005634|GO:0006260
Ssu2g2042 809 Gene3D - 315 453 IPR012340 -
Ssu2g2042 809 SUPERFAMILY Retrovirus zinc finger-like domains 755 783 IPR036875 GO:0003676|GO:0008270
Ssu2g2042 809 Pfam Zinc knuckle 765 779 IPR001878 GO:0003676|GO:0008270
Ssu2g2042 809 Gene3D - 454 645 IPR012340 -
Ssu2g2042 809 TIGRFAM rpa1: replication factor-a protein 1 (rpa1) 180 644 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ssu2g2042 809 SUPERFAMILY Nucleic acid-binding proteins 321 450 IPR012340 -
Ssu2g2042 809 Gene3D - 1 58 IPR012340 -
Ssu2g2042 809 PANTHER REPLICATION FACTOR A 1, RFA1 1 682 IPR004591 GO:0003677|GO:0005634|GO:0006260|GO:0006281|GO:0006310
Ssu2g2042 809 ProSiteProfiles Zinc finger CCHC-type profile. 765 779 IPR001878 GO:0003676|GO:0008270
Ssu2g2042 809 CDD RPA1_DBD_C 471 644 IPR013955 -
Ssu2g2042 809 CDD RPA1_DBD_B 337 444 - -
Ssu2g2042 809 CDD RPA1_DBD_A 205 307 - -
Ssu2g2042 809 Gene3D - 714 780 - -
Ssu2g2042 809 Pfam OB-fold nucleic acid binding domain 216 305 IPR004365 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2042 Ssu-Chr2 74156940 74160147 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2042 1 750 Core DNA Replication Machinery Family AT5G45400 52.020 0.0 806
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2042 K07466 - gmx:100778597 1238.02