Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2033 ATGTTTACGTGCATAAGCTGTACGAAGCAAACGGCGGAGGAGGGGGAAGAAGGCGGAGAGAGTGGCACGCCGAGGACAAAAGAAGCCGTCAAAAGCCTGAGTGCGCAGTTAAAGGATATGGCACTGAAGTTTTCAGGTGCTTACAAGCAATGCAAACCCTGCGCAGGGTCCAGTACCTTCAAGAAAGGACAGAGACCATATCCTGACTTCGACACCATTTCAGAAGGGGTTCCATACCCCTATATTGGAGGTGTAAGCTCAACTTCAACCCCTGCTTGGGACTTCACAAGCTCCAATTTCCCTGGTGGTAGATCAGACCAAAGATTTATGGGTGGACTCAGTGATGATAGGACCCCTAGAGGGCCTGAGTCAGCATCAGCCAGTGATGTAGTTGTTGAGGATGAGGATGAAACCAAGGAGTGGATGGCACAGGTGGAACCAGGGGTTCACATTACCTTTGTGTCACTTCCTAATGGGGGAAATGATCTCAAAAGAATTCGCTTCAGCCGAGAGATGTTCAACAAGTGGCAAGCTCAAAAATGGTGGGGTGAGAATTACGACCGAATCATGGAACTTTACAACGTCCAGAGATTCAATCGACAAGCTCTTAATACTCCTTCGAGATCTGAGGATGAGCAAAGAGATTCTTCTTACTCAAGACTGACATCTGCACAAGAAAGCCCCATGGCCTCGTCATTAAACAAGGATTGGACACCGAGGAGTCACTATAAGCCCTCTGAAGCTATGGATCAAGGTGGTGGCCAAAACTTGCATGCAGGGTCATCCGTGGAAGCATCAAGGACAACCACCTCTTCTAGAGATGAGCCTTCAATGAGCAATGCCAGTGACCTGGAGGCAGAATGGATAGAGCAAGACGAACCTGGAGTGTACATTACAATCAGGCAATTAGCTGATGGAACAAAGGATCTTCGCCGTGTCAGATTCAGCCGGGAGAGATTTGGGGAGGGACATGCAAAGAAGTGGTGGGAAGAGAACAGAGAAAGAATACAAGCTCAGTATCTTTGA 1026 0.4825 MFTCISCTKQTAEEGEEGGESGTPRTKEAVKSLSAQLKDMALKFSGAYKQCKPCAGSSTFKKGQRPYPDFDTISEGVPYPYIGGVSSTSTPAWDFTSSNFPGGRSDQRFMGGLSDDRTPRGPESASASDVVVEDEDETKEWMAQVEPGVHITFVSLPNGGNDLKRIRFSREMFNKWQAQKWWGENYDRIMELYNVQRFNRQALNTPSRSEDEQRDSSYSRLTSAQESPMASSLNKDWTPRSHYKPSEAMDQGGGQNLHAGSSVEASRTTTSSRDEPSMSNASDLEAEWIEQDEPGVYITIRQLADGTKDLRRVRFSRERFGEGHAKKWWEENRERIQAQYL 341
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2033 341 MobiDBLite consensus disorder prediction 100 127 - -
Ssu2g2033 341 MobiDBLite consensus disorder prediction 1 30 - -
Ssu2g2033 341 MobiDBLite consensus disorder prediction 203 283 - -
Ssu2g2033 341 Pfam Transcription factor regulating root and shoot growth via Pin3 139 193 IPR013591 -
Ssu2g2033 341 Pfam Transcription factor regulating root and shoot growth via Pin3 285 340 IPR013591 -
Ssu2g2033 341 MobiDBLite consensus disorder prediction 255 279 - -
Ssu2g2033 341 ProSiteProfiles BRX domain profile. 139 194 IPR013591 -
Ssu2g2033 341 PANTHER PROTEIN BREVIS RADIX-LIKE 1 1 341 IPR044532 -
Ssu2g2033 341 MobiDBLite consensus disorder prediction 218 239 - -
Ssu2g2033 341 Pfam Transcription factor BRX N-terminal domain 21 54 IPR027988 -
Ssu2g2033 341 PANTHER BREVIS RADIX-LIKE PROTEIN-RELATED 1 341 - -
Ssu2g2033 341 ProSiteProfiles BRX domain profile. 286 341 IPR013591 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2033 Ssu-Chr2 73736036 73741031 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2033 1 341 Major Intrinsic Protein MIP AT1G31880 65.546 4.41e-159 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2033 - - gmx:100809614 611.298
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2033 2 73736036 73741031 Ssu2g2033 2 73736036 73741031 ECH