Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2030 ATGAGCGTTCCTCCTCCGCCGCCGGCAATGTGGACGCCGTTCACGGCGGCGCAGTGGCACGAGCTGGAGCACCAGGCCCTCATCTTTAAGTACCTCAAGGCGGGTCTCTCGGTTCCCCCCGACCTCCTTCTCCCCATTCGCAGGAGCCTCCAATTGATGCCCCACCCATCTCTGGGGTATTATGGGAAGAAGATAGACCCTGAACCGGGTCGGTGCAGGAGAACCGATGGGAAGAAGTGGAGGTGCTCCAGGGATGCTCACCCTGACTCCAAGTACTGCGACCGCCACATGATACGACGTCGTTACCGTTCAAGAAAGCCTGTGGAATCTCAACCTCACTCTTCTTCTACTTCTTCAAACCCTGCTGCTACTACTGCACCTGCTACTGCTTCTGCAACTGCAACTGCAACAACCCTTCACACCCTTCCCTTGCACACCAATGGCACTCGGGAAGGTTTCGGTTTCACCCTTGGGAACACGGCCACCCTCCCCCACCTTCACATGGACCCCCTCACTCTTCCTGGTGACAATACCAAGAAAACTTACAGGTTTGGACTGAACTCAGAAGCTGATGAGCACAACGTCTTACAGAAAGATCTGGGAAGTGTGAGGTATCAAGGTTATGACTTTACCTCAGATAGCATGTGGTCTCATATATCTCAGATTCCATCAAATACTGTTTCGGAATCGAGAAGTAGTTCTACTATGCTTGGCAACTGCTTCCAACAGCAAACAATGCGAGATGCTGAGCTGTTGAACCTGGAAACTGCAAGGACCAAAGAACTTGTCTTTAGAGGCCAGTTAAGTTCAGCAGGGAGTTCGAAACAGGAATATCAGCCCCCCAGTCCCTCTTCGGTGACTGGGACTGGAAGAAGGATTTAA 882 0.5227 MSVPPPPPAMWTPFTAAQWHELEHQALIFKYLKAGLSVPPDLLLPIRRSLQLMPHPSLGYYGKKIDPEPGRCRRTDGKKWRCSRDAHPDSKYCDRHMIRRRYRSRKPVESQPHSSSTSSNPAATTAPATASATATATTLHTLPLHTNGTREGFGFTLGNTATLPHLHMDPLTLPGDNTKKTYRFGLNSEADEHNVLQKDLGSVRYQGYDFTSDSMWSHISQIPSNTVSESRSSSTMLGNCFQQQTMRDAELLNLETARTKELVFRGQLSSAGSSKQEYQPPSPSSVTGTGRRI 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2030 293 MobiDBLite consensus disorder prediction 103 133 - -
Ssu2g2030 293 PANTHER GROWTH-REGULATING FACTOR 1 281 - -
Ssu2g2030 293 Pfam WRC 67 109 IPR014977 -
Ssu2g2030 293 MobiDBLite consensus disorder prediction 268 293 - -
Ssu2g2030 293 ProSiteProfiles WRC domain profile. 66 110 IPR014977 -
Ssu2g2030 293 MobiDBLite consensus disorder prediction 109 133 - -
Ssu2g2030 293 PANTHER - 1 281 IPR031137 GO:0005634|GO:0006351|GO:0032502
Ssu2g2030 293 Pfam QLQ 13 47 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu2g2030 293 ProSiteProfiles QLQ domain profile. 13 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
Ssu2g2030 293 SMART QLQ_2 12 48 IPR014978 GO:0005524|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2030 Ssu-Chr2 73691789 73694353 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2030 13 109 GRF Transcription Factor Family AT3G13960 60.550 1.58e-40 143
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRF Ssu2g2030 WRC 2e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2030 - - gmx:100809947 445.277