Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2020 ATGGAGGGTGGGGGAAGAGAAGGTTATAATGGAGTGGTGATGACGATGACAAGAGACCCGAAGCCAAGGCTAAGGTGGACAGGAGATCTTCACGACCGGTTTGTGGATGCAGTCACAAAGCTTGGTGGCCCCGACAAGGCGACCCCGAAGTCTGTTCTGAGGTTAATGGGCTTGAAAGGTTTGACACTATATCATTTGAAGAGCCATTTACAGAAGTATAGACTTGGACAGCAGGCTCGAAAACAAAATGAGGAACTGCACAAAGAGAATAGTAgATGTTCGTATGTAAATTTTAGCAATCATTCTTCGGGGCCTAACACCAGTTACAGAGGTGATAATGAAGGGGgAGAAATCCCAATAGCAGAAGCAATGAGATGTCAGATTGAAGTTCAAAAGAGATTGGAAGAGCAGCTAGagGTACAGAAGAAATTGCAGATGAGAATAGAGGCACAAGGGAAGTATTTGCAAGCGGTGTTAGAGAAAGCCCAGAGGAGCCTTTCCCTGGATGGACCAGGCAGTCTTGAAGCATCACGAGCTCAGTTGACTGAATTCAACTCTGCTTTGTCAAATTTCATGGAAAATATGAACAAAGATAGCAAAGAAAACGTAATACAAGTGAATGATTTTTACAGTAAGATCCATGGCTCAGTTTTCCATTATCAGGAAgtaggaagagaagagaataggGATCAAAAGCCCAAGGTTGAAGGGGGTTCAATACAGTTTGACTTAAACATCAAAGGTAGCAATGACCTTGTATCTGCAGGTGGAGCTGAAATGGAAGccaatattatatcatatagggtataa 810 0.4074 MEGGGREGYNGVVMTMTRDPKPRLRWTGDLHDRFVDAVTKLGGPDKATPKSVLRLMGLKGLTLYHLKSHLQKYRLGQQARKQNEELHKENSRCSYVNFSNHSSGPNTSYRGDNEGGEIPIAEAMRCQIEVQKRLEEQLEVQKKLQMRIEAQGKYLQAVLEKAQRSLSLDGPGSLEASRAQLTEFNSALSNFMENMNKDSKENVIQVNDFYSKIHGSVFHYQEVGREENRDQKPKVEGGSIQFDLNIKGSNDLVSAGGAEMEANIISYRV 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2020 269 SUPERFAMILY Homeodomain-like 21 78 IPR009057 -
Ssu2g2020 269 Pfam MYB-CC type transfactor, LHEQLE motif 119 164 IPR025756 -
Ssu2g2020 269 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 18 78 IPR017930 -
Ssu2g2020 269 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 21 76 IPR006447 GO:0003677
Ssu2g2020 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 255 IPR044848 GO:0003700
Ssu2g2020 269 Pfam Myb-like DNA-binding domain 24 74 IPR001005 -
Ssu2g2020 269 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 10 255 - -
Ssu2g2020 269 Coils Coil 131 151 - -
Ssu2g2020 269 Gene3D - 20 78 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2020 Ssu-Chr2 73530637 73533027 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2020 12 190 G2-like Transcription Factor Family AT3G24120 53.476 9.58e-59 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Ssu2g2020 Myb_DNA-binding 1.8e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2020 - - gmx:100810146 497.278