Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2015 ATGGCAGCAAACGTAAACTGCGACATGCCCCTCACTCACCACCCTCATTGGTTCTCACCAAAAACCGGAATTTATCATAGCAAACACCCTCCCGTGGACCTTCCCAACTACCCTTTTCTCGACCTTGTTTCCTTCATTTTCTCCCACCGCCACAATGGGGTTTCGGCCCTCGTTGATTCCTCATCTGGCTCTTCCATTTCCCACTCGAAGTTGTTACCTTTGGTCAAATCCACTGCTTCTGGTCTTCACAAAATGGGCGTTTCACAAGGTGACGTGGTCCTGCTTCTTCTCCCAAATTCCATTTACTACCCCATTGTGTTCTTGGCTGTTCTCTATCTTGGTGCAGTTGTCACACCCTTGAATCCTCTCAGTAGTGTCTACGAAATACGCAAACAGGTTGCTGAGTGTGGTGTGAGTCTGGCTTTTGCTGTGCCTGAGAATTTCAAGAAAATAGAACCCTTTGGAATTCCCATCGTTGCTGTGCCAGAGAATGAGGAGGGTTTGAGGCATGGTTGTTTCTCGAGCTTTCGTGATTTGATTTCTTGTGACTCTGATTTGCCTCAGAGGCCTGTTATTATTAAAGGGGATGACACTGCGGGGATATTGTATTCTTCAGGGACTACTGGGGTGAGCAAAGGGGTTGTTCTGTCCCATAAAAACCTTGTTGCTATGGTTGAGCTTTTTGTGAGGTTTGAGGCTTCTCAATATGAAGGCTCTTGCTTGAGGAACGTGTATTTAGCTGTCTTGCCAATGTTTCATGTGTATGGTTTGTCGCTATTTGCTGTGGGATTGCTTTCTTTGGGTTCTACTGTCGTTGTGATGAGGAAATTTGACATGGACGAGGTTGTCAGGGTGATTGATGAATATAAAGTTACACACTTTCCTGTTGTTCCGCCAATTTTGACGGCATTGATAACGAGGGCAAAGGGTGTTCATGGCAGTAAGTTGCAGAGTTTGATACAGGTCTCCAGCGGTGCAGCACCTTTGAGCATGGGAGTTATTAATGATTTTCTCCAAACTTTCCCTAATGTTGATTTTATACAGGGTTATGGAATGACTGAGTCAACTGCAGTAGGAACACGTGGCTTCAATACTGAAAAGTTTCGCAATTATTCTTCAATAGGGTTGTTGGCTCCAAACATGGAGGCAAAAGTGGTAGACTGGAATACTGGTGCTTTTTTGCCCCCAGGCAGCAGCGGGGAACTTTGGTTGAGAGGGCCTTCAATTATGAAGGGATACCTGAATAATGAGGAAGCTACAATGTCAACAATTGATAAGGATGGTTGGCTACGTACTGGAGATGTTGTTTATTTTGATCATGATGGGTATTTACATATATCTGACCGCCTGAAAGATATCATCAAATACAAGGGCTTTCAGATTGCTCCTGCCGATTTAGAAGCTGTGTTAATTTTGCATCCTGAAATAGTTGATGTTGCTGTTACAGGTGCTATGGATGAAGAAACTGGGGAGATGCCAGTGGCATTTGTGGTCAGGAAGGTTGGAAGTGTACTGTCTCCAAAGCATATTATGGACTATGTTACTGAGCAGGTTGCTCCATATAAGAAGGTTAGGAAAGTGTTCTTCACTGACAAGATACCAAGATCTGCGACTGGGAAGATATTACGAAAGCAGCTGAGGAATTGCTTGACTTCTAAactataa 1665 0.4408 MAANVNCDMPLTHHPHWFSPKTGIYHSKHPPVDLPNYPFLDLVSFIFSHRHNGVSALVDSSSGSSISHSKLLPLVKSTASGLHKMGVSQGDVVLLLLPNSIYYPIVFLAVLYLGAVVTPLNPLSSVYEIRKQVAECGVSLAFAVPENFKKIEPFGIPIVAVPENEEGLRHGCFSSFRDLISCDSDLPQRPVIIKGDDTAGILYSSGTTGVSKGVVLSHKNLVAMVELFVRFEASQYEGSCLRNVYLAVLPMFHVYGLSLFAVGLLSLGSTVVVMRKFDMDEVVRVIDEYKVTHFPVVPPILTALITRAKGVHGSKLQSLIQVSSGAAPLSMGVINDFLQTFPNVDFIQGYGMTESTAVGTRGFNTEKFRNYSSIGLLAPNMEAKVVDWNTGAFLPPGSSGELWLRGPSIMKGYLNNEEATMSTIDKDGWLRTGDVVYFDHDGYLHISDRLKDIIKYKGFQIAPADLEAVLILHPEIVDVAVTGAMDEETGEMPVAFVVRKVGSVLSPKHIMDYVTEQVAPYKKVRKVFFTDKIPRSATGKILRKQLRNCLTSKL 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2015 554 Gene3D - 452 552 IPR045851 -
Ssu2g2015 554 PANTHER 4-COUMARATE--COA LIGASE-LIKE 6 12 553 - -
Ssu2g2015 554 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 12 553 - -
Ssu2g2015 554 CDD 4CL 34 546 - -
Ssu2g2015 554 Pfam AMP-binding enzyme 50 456 IPR000873 -
Ssu2g2015 554 ProSitePatterns Putative AMP-binding domain signature. 201 212 IPR020845 -
Ssu2g2015 554 Gene3D - 23 451 IPR042099 -
Ssu2g2015 554 SUPERFAMILY Acetyl-CoA synthetase-like 49 551 - -
Ssu2g2015 554 Pfam AMP-binding enzyme C-terminal domain 466 540 IPR025110 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2015 Ssu-Chr2 73491922 73496322 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2015 15 554 Monolignol Biosynthesis Gene Families AT4G19010 59.854 0.0 665
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2015 K01904 - gmx:100804808 990.719
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Ssu2g2015 2 73491922 73496322 Ssu2g2015 2 73491922 73496322 ECH