Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2011 ATGGCAAGGACTCGCATTATGACGGCGGGAGAAAGGGCTCAGCGGGAACCGAATTGGAGAAACGTGCCACTATTTTCTTTTGCCCCCAGAGCATATTTTGCCAGGCTGGCCATGAGAACCTTACCCCCTGTTATATGTTTTCGTGCAGGTGAAACCACTGGATCAAACAGTGATTGTCCTATTTGCATGGAAGAATTTAAGAATGGGGAGTTAATTCAACCTTTTGGAGTGTGTGTCCACGAATTTCATTCAGCCTGCGTTAACTCTTGGTTACTCGGTGGAAAAACTACTTGTCCAGTTTGTCGCAAAGAATTGTCAATTACTATCTTCTAG 333 0.4474 MARTRIMTAGERAQREPNWRNVPLFSFAPRAYFARLAMRTLPPVICFRAGETTGSNSDCPICMEEFKNGELIQPFGVCVHEFHSACVNSWLLGGKTTCPVCRKELSITIF 110
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2011 110 SMART ring_2 59 101 IPR001841 -
Ssu2g2011 110 PANTHER OS06G0666500 PROTEIN 19 105 - -
Ssu2g2011 110 PANTHER RING-H2 FINGER PROTEIN ATL61-RELATED-RELATED 19 105 - -
Ssu2g2011 110 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 36 108 IPR013083 -
Ssu2g2011 110 Pfam Ring finger domain 58 102 IPR001841 -
Ssu2g2011 110 Coils Coil 107 110 - -
Ssu2g2011 110 ProSiteProfiles Zinc finger RING-type profile. 59 102 IPR001841 -
Ssu2g2011 110 SUPERFAMILY RING/U-box 53 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2011 Ssu-Chr2 73444945 73445277 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2011 26 106 C3H Transcription Factor Family AT2G17450 32.955 7.74e-12 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2011 - K15692 aprc:113865236 139.043