Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g2010 ATGGGTCGGAAACACGACGCCGTTTCGCTAAGCGAACCAGTCGCCGAAGAAAAAGCCCCCTACAGCCCCGAGGTCGAGTCCGAGAagcagaagaagaaaaagaagaagaagaacaaagacAAGCATCAAATCGAAAGCAGCCCCAAACGAAAGCTCGACCCTCAAAACGACACCGAAtcgaagaagaggaagaagaagcaCTCCAAAGAGAACGCCGAAGAAACCAACGGCGGTAACCGTGACGAAACGATGACGGAGGGGTCCGTGGTGGTTACTGGAAAGAATGTGGGAGACGCGAAATACGCGGCGGTGAAAAGCTTCGCGGATTCGGGAGTGGCGGAGAACGTGCTGGAGTGCTGCAAGGGTTTCGAGAAGCCTTCTCCGATTCAGTCCCGAGCGTGGCCTTTCTTATTGGACGGTCGTGATTTGATTGGAATCGCGGCCACTGGCTCAgGGAAGACGCTGGCGTTCGGCGTACCGGCGGTTATGCATGTTTTGGGAAAGCGAAAGAGTAAAGGCTCGAAGGGTCGTAACCCTCTTTGCCTCGTGCTCTCTCCCACCAGAGAGCTAGCTCAACAAATATCAGATGTCATGTGTGATGCTGGTAGGTCTTGTGGTGTGGAATCAATCTGTTTGTATGGTGGAACCTCCAAAGGGCCACAAATCTCCTCACTAAAATCTGGCATTGACATTGTCATTGGAACCCCTGGTCGTATCCAGGATCTGATTGAAATGGGTGTCTGTTGCCTAAAAGAAGTATCTTTTGTGGTACTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAGTAGTTCGCTCTATACTGGGTCAGACGTGTTCTGTTCGTCAAATTGTTATGTTCAGTGCTACATGGCCTTTGCCGGTTCATCACTTGGCACAAGAGTTTATGGATCCCAATCCTGTAAAAGTTGTTGTAGGTTCAGAAGACTTAGCAGCCAATCATGATGTCATGCAGATAGTTGAGGTCTTGGATGACCATTCTCGTGATAAGCGCCTGATTGCTTTACTGGAAAAGTACCACAAATCTCAGAGGAATCGAGtattggtttttgttttgtacaAATGGGAAACCAAACGAGTTGAAAATATGCTTCAAGAAGGGGGTTGGAAGGTTGTGTCAATACACGGGGACAAAGCCCAACATGATCGCACAAAGGCACTATCATTATTCAAGAAGGGAAGCTGTCCTTTAATGATTGCTACTGATGTGGCTGCACGGGGATTGGATATTCCAGATGTTGAAGTAGTGATCAACTATAGTTTTCCTCTGACTACAGAAGATTATGTTCATAGAATTGGGCGGACTGGACGAGCTGGTAAGAAAGGTGTTGCCCATACATTCTTCACACAGCAGAATAAGGGACTTGCTGGGGAGCTGGTGAATGTTTTAAGAGAAGCAGAGCAAATTGTGCCGGATGCCCTCTTGAAATTTGGCACACATGTAAAGAAAaagGAATCCAAGCTTTATGGGGCACACTTCAAGGAAATCCCTGTTGATGCTCCAAAGTCTCAAAAGAAAACATTCGACAACTCTGACGATGAAGACTAA 1575 0.4527 MGRKHDAVSLSEPVAEEKAPYSPEVESEKQKKKKKKKNKDKHQIESSPKRKLDPQNDTESKKRKKKHSKENAEETNGGNRDETMTEGSVVVTGKNVGDAKYAAVKSFADSGVAENVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGVPAVMHVLGKRKSKGSKGRNPLCLVLSPTRELAQQISDVMCDAGRSCGVESICLYGGTSKGPQISSLKSGIDIVIGTPGRIQDLIEMGVCCLKEVSFVVLDEADRMLDMGFEQVVRSILGQTCSVRQIVMFSATWPLPVHHLAQEFMDPNPVKVVVGSEDLAANHDVMQIVEVLDDHSRDKRLIALLEKYHKSQRNRVLVFVLYKWETKRVENMLQEGGWKVVSIHGDKAQHDRTKALSLFKKGSCPLMIATDVAARGLDIPDVEVVINYSFPLTTEDYVHRIGRTGRAGKKGVAHTFFTQQNKGLAGELVNVLREAEQIVPDALLKFGTHVKKKESKLYGAHFKEIPVDAPKSQKKTFDNSDDED 524
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g2010 524 PANTHER BNAA08G07020D PROTEIN 22 510 - -
Ssu2g2010 524 MobiDBLite consensus disorder prediction 41 80 - -
Ssu2g2010 524 Coils Coil 25 45 - -
Ssu2g2010 524 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 178 461 IPR027417 -
Ssu2g2010 524 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 336 487 IPR001650 -
Ssu2g2010 524 Gene3D - 55 314 IPR027417 -
Ssu2g2010 524 CDD DEADc 121 312 - -
Ssu2g2010 524 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 134 311 IPR014001 -
Ssu2g2010 524 CDD SF2_C_DEAD 325 457 - -
Ssu2g2010 524 SMART helicmild6 367 448 IPR001650 -
Ssu2g2010 524 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 257 265 IPR000629 -
Ssu2g2010 524 Gene3D - 315 490 IPR027417 -
Ssu2g2010 524 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 22 510 - -
Ssu2g2010 524 Pfam Helicase conserved C-terminal domain 339 448 IPR001650 -
Ssu2g2010 524 MobiDBLite consensus disorder prediction 1 86 - -
Ssu2g2010 524 Pfam DEAD/DEAH box helicase 128 295 IPR011545 GO:0003676|GO:0005524
Ssu2g2010 524 SMART ultradead3 122 328 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g2010 Ssu-Chr2 73393167 73398315 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g2010 104 477 Eukaryotic Initiation Factors Gene Family AT3G19760 33.069 1.18e-57 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g2010 K14811 - gmx:100806057 915.605