Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Ssu2g1998 ATGTTCAATATTGATGGATTTAGCAGAATTAGATCCCCAAGTGCAGAGCAGATTCAGAGGATCTCTGCTAGGCTAAGGCAGTACGGTAAGATTGAAGGCAAGAATGTCTTTTATTGGTTCAATAACTATAAAGCTCGAGAAAGGCAGAAGAAAAGGTTCACTTCTGATAATGTGCCCATGCAAAGACGGCAACTAATGCTGTTGCTTAGAAACCTAAAGATCCCATTCATACCAAGCATTGTAACATATCATCTACTGGACTGCTCAACATCAGCTAGGGGTTGCAGTGGCCATGTTGGAATAAACCACAACTTGGGATGGGTCGGTGTGGACTTATATTCCTCAGCCTATGCCAATTTCTTTGACAAAATAAGGCCAACTGAAGATACCCTAGAATAA 399 0.4135 MFNIDGFSRIRSPSAEQIQRISARLRQYGKIEGKNVFYWFNNYKARERQKKRFTSDNVPMQRRQLMLLLRNLKIPFIPSIVTYHLLDCSTSARGCSGHVGINHNLGWVGVDLYSSAYANFFDKIRPTEDTLE 132
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Ssu2g1998 132 Pfam Homeodomain 7 49 IPR001356 GO:0003677
Ssu2g1998 132 PANTHER PROTEIN WUSCHEL 10 60 - -
Ssu2g1998 132 SUPERFAMILY Homeodomain-like 7 56 IPR009057 -
Ssu2g1998 132 PANTHER WUSCHEL-RELATED HOMEOBOX 1-RELATED 10 60 IPR044555 GO:0003700|GO:0099402
Ssu2g1998 132 ProSiteProfiles 'Homeobox' domain profile. 7 50 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Ssu2g1998 Ssu-Chr2 73261378 73263714 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Ssu2g1998 10 126 Wox Gene Family AT2G17950 39.205 5.75e-22 86.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-WOX Ssu2g1998 Homeodomain 6.3e-10 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Ssu2g1998 - - vra:106776674 161.384